Hb_005730_120

Information

Type -
Description -
Location Contig5730: 132109-139899
Sequence    

Annotation

kegg
ID tcc:TCM_029019
description RNA-binding family protein isoform 1
nr
ID XP_012069003.1
description PREDICTED: protein WHI4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24791 PE=4 SV=1
Gene Ontology
ID GO:0000166
description u2 small nuclear ribonucleoprotein b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49466: 132083-134721 , PASA_asmbl_49467: 132252-136814 , PASA_asmbl_49468: 134730-136823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_120 0.0 - - PREDICTED: protein WHI4 [Jatropha curcas]
2 Hb_005271_220 0.0539646636 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
3 Hb_032808_010 0.0573954178 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
4 Hb_002303_070 0.0574677235 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
5 Hb_001599_040 0.0616265964 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
6 Hb_004453_130 0.0673883966 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
7 Hb_002311_180 0.0681487845 - - drought-responsive family protein [Populus trichocarpa]
8 Hb_007423_040 0.0690204055 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
9 Hb_001357_150 0.0705944557 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
10 Hb_001214_060 0.0733782578 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
11 Hb_002820_050 0.0735520885 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
12 Hb_001221_100 0.0748640995 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
13 Hb_008511_120 0.0782743731 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
14 Hb_005357_080 0.0803804096 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
15 Hb_002245_030 0.080920043 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_003376_330 0.0813545699 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
17 Hb_024958_010 0.0816411034 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
18 Hb_002232_410 0.0817321312 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
19 Hb_002872_030 0.0821185275 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_002205_110 0.082566488 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005730_120 Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_005271_220--Hb_002303_070 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_032808_010--Hb_008511_120 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_002303_070--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_002820_050 Hb_002820_050 Hb_004453_130--Hb_002820_050 Hb_000049_140 Hb_000049_140 Hb_004453_130--Hb_000049_140 Hb_004453_130--Hb_001599_040 Hb_004453_130--Hb_005271_220 Hb_007423_040 Hb_007423_040 Hb_004453_130--Hb_007423_040 Hb_002311_180--Hb_005271_220 Hb_007416_300 Hb_007416_300 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_007885_060 Hb_007885_060 Hb_002311_180--Hb_007885_060 Hb_021576_100 Hb_021576_100 Hb_002311_180--Hb_021576_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.484 14.5328 21.0901 21.9628 16.8559 21.4214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7057 25.0448 12.4285 17.114 11.9539

CAGE analysis