Hb_005731_010

Information

Type -
Description -
Location Contig5731: 27008-31591
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN64520.1
description hypothetical protein VITISV_030941 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AFY0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030941 PE=4 SV=1
Gene Ontology
ID GO:0003676
description cysteine-rich rlk (receptor-like protein kinase)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_010 0.0 - - hypothetical protein VITISV_030941 [Vitis vinifera]
2 Hb_012655_010 0.0320909443 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
3 Hb_004076_060 0.0398969261 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
4 Hb_000189_180 0.0757607958 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
5 Hb_000109_140 0.0790871971 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
6 Hb_000941_110 0.0802835795 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_001958_010 0.0820216246 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
8 Hb_004204_060 0.0954727997 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
9 Hb_001516_010 0.0980218172 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
10 Hb_017043_040 0.100913667 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_002391_030 0.1035157781 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
12 Hb_005018_010 0.1041306142 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_007850_020 0.1059280289 - - conserved hypothetical protein [Ricinus communis]
14 Hb_162174_010 0.106479535 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
15 Hb_001079_060 0.1096113168 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
16 Hb_003911_050 0.1144083036 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
17 Hb_003894_170 0.1152389338 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
18 Hb_012035_010 0.1156181638 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
19 Hb_051663_010 0.1188231981 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000000_390 0.1206620419 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]

Gene co-expression network

sample Hb_005731_010 Hb_005731_010 Hb_012655_010 Hb_012655_010 Hb_005731_010--Hb_012655_010 Hb_004076_060 Hb_004076_060 Hb_005731_010--Hb_004076_060 Hb_000189_180 Hb_000189_180 Hb_005731_010--Hb_000189_180 Hb_000109_140 Hb_000109_140 Hb_005731_010--Hb_000109_140 Hb_000941_110 Hb_000941_110 Hb_005731_010--Hb_000941_110 Hb_001958_010 Hb_001958_010 Hb_005731_010--Hb_001958_010 Hb_012655_010--Hb_004076_060 Hb_012655_010--Hb_000941_110 Hb_017043_040 Hb_017043_040 Hb_012655_010--Hb_017043_040 Hb_012655_010--Hb_000109_140 Hb_004204_060 Hb_004204_060 Hb_012655_010--Hb_004204_060 Hb_004076_060--Hb_001958_010 Hb_004076_060--Hb_000189_180 Hb_004076_060--Hb_000941_110 Hb_004076_060--Hb_000109_140 Hb_000189_180--Hb_001958_010 Hb_000189_180--Hb_000109_140 Hb_004037_040 Hb_004037_040 Hb_000189_180--Hb_004037_040 Hb_032572_010 Hb_032572_010 Hb_000189_180--Hb_032572_010 Hb_000109_140--Hb_001958_010 Hb_003894_170 Hb_003894_170 Hb_000109_140--Hb_003894_170 Hb_000941_110--Hb_001958_010 Hb_003911_050 Hb_003911_050 Hb_000941_110--Hb_003911_050 Hb_005018_010 Hb_005018_010 Hb_000941_110--Hb_005018_010 Hb_001958_010--Hb_032572_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0412535 0.0329337 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00641533 0.034188

CAGE analysis