Hb_005731_030

Information

Type -
Description -
Location Contig5731: 37510-48370
Sequence    

Annotation

kegg
ID rcu:RCOM_1446810
description hypothetical protein
nr
ID XP_012067298.1
description PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
swissprot
ID Q9CSU0
description Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus GN=Rprd1b PE=1 SV=2
trembl
ID A0A067LCJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26822 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49469: 37652-48071 , PASA_asmbl_49471: 44729-44840 , PASA_asmbl_49472: 44898-45233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_030 0.0 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
2 Hb_010222_050 0.0401705706 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
3 Hb_003029_110 0.0573374358 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
4 Hb_123352_020 0.0598421968 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
5 Hb_000820_170 0.0653495717 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
6 Hb_002518_280 0.0654585656 - - phosphate transporter [Manihot esculenta]
7 Hb_010618_010 0.0659142057 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_000166_130 0.0665293777 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000487_290 0.0679313028 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
10 Hb_000502_050 0.0682128075 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
11 Hb_000101_240 0.0690358659 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
12 Hb_000796_030 0.0711693278 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
13 Hb_001818_070 0.0726273242 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_000152_380 0.0728271384 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
15 Hb_004724_060 0.0732793364 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
16 Hb_001226_030 0.0733917011 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
17 Hb_000827_070 0.0747113093 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_000780_230 0.0749983475 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
19 Hb_120327_010 0.0750814816 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
20 Hb_007575_050 0.0761380012 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]

Gene co-expression network

sample Hb_005731_030 Hb_005731_030 Hb_010222_050 Hb_010222_050 Hb_005731_030--Hb_010222_050 Hb_003029_110 Hb_003029_110 Hb_005731_030--Hb_003029_110 Hb_123352_020 Hb_123352_020 Hb_005731_030--Hb_123352_020 Hb_000820_170 Hb_000820_170 Hb_005731_030--Hb_000820_170 Hb_002518_280 Hb_002518_280 Hb_005731_030--Hb_002518_280 Hb_010618_010 Hb_010618_010 Hb_005731_030--Hb_010618_010 Hb_010222_050--Hb_003029_110 Hb_000060_090 Hb_000060_090 Hb_010222_050--Hb_000060_090 Hb_000152_380 Hb_000152_380 Hb_010222_050--Hb_000152_380 Hb_000502_050 Hb_000502_050 Hb_010222_050--Hb_000502_050 Hb_002823_030 Hb_002823_030 Hb_010222_050--Hb_002823_030 Hb_000166_130 Hb_000166_130 Hb_003029_110--Hb_000166_130 Hb_001195_320 Hb_001195_320 Hb_003029_110--Hb_001195_320 Hb_000343_120 Hb_000343_120 Hb_003029_110--Hb_000343_120 Hb_003371_110 Hb_003371_110 Hb_003029_110--Hb_003371_110 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260 Hb_006252_040 Hb_006252_040 Hb_000820_170--Hb_006252_040 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_016898_010 Hb_016898_010 Hb_000820_170--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_000820_170--Hb_123352_020 Hb_000038_170 Hb_000038_170 Hb_002518_280--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_002518_280--Hb_010618_010 Hb_002518_280--Hb_000152_380 Hb_000879_200 Hb_000879_200 Hb_002518_280--Hb_000879_200 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150 Hb_001248_060 Hb_001248_060 Hb_010618_010--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_010618_010--Hb_000225_040 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.98 14.222 8.06375 7.31196 15.5029 20.1054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.42 11.8581 12.9556 9.50893 9.29663

CAGE analysis