Hb_005731_070

Information

Type -
Description -
Location Contig5731: 79160-80182
Sequence    

Annotation

kegg
ID rcu:RCOM_1447040
description hypothetical protein
nr
ID XP_002512897.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O82015
description Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2
trembl
ID B9RH38
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49478: 78358-80259 , PASA_asmbl_49480: 78278-80247
cDNA
(Sanger)
(ID:Location)		 004_I04.ab1: 78358-79210 , 018_C22.ab1: 78278-79654 , 026_F06.ab1: 78278-79572

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000011_370 0.0820828494 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
3 Hb_007386_030 0.0884660239 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
4 Hb_007017_100 0.0935074701 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
5 Hb_000714_060 0.0950275044 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
6 Hb_000014_080 0.0954939692 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
7 Hb_000594_160 0.0967559671 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_005766_010 0.0996841687 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_008175_050 0.101001378 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
10 Hb_004282_010 0.1069617562 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
11 Hb_001040_200 0.1072663091 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_015001_030 0.1076549937 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
13 Hb_005663_090 0.1085916463 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
14 Hb_003189_010 0.1097143022 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
15 Hb_001157_190 0.1104347222 - - PREDICTED: protein YLS3 [Jatropha curcas]
16 Hb_005144_080 0.1107862238 - - Serine carboxypeptidase, putative [Ricinus communis]
17 Hb_000956_070 0.1128996127 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
18 Hb_007875_020 0.1138234326 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
19 Hb_022250_160 0.1162999994 - - respiratory burst oxidase A [Manihot esculenta]
20 Hb_093218_010 0.1186659822 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]

Gene co-expression network

sample Hb_005731_070 Hb_005731_070 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_007386_030 Hb_007386_030 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_000714_060 Hb_000714_060 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_000749_120 Hb_000749_120 Hb_000011_370--Hb_000749_120 Hb_008566_080 Hb_008566_080 Hb_000011_370--Hb_008566_080 Hb_000011_370--Hb_000714_060 Hb_000011_370--Hb_000014_080 Hb_001597_030 Hb_001597_030 Hb_000011_370--Hb_001597_030 Hb_007386_030--Hb_000594_160 Hb_007875_020 Hb_007875_020 Hb_007386_030--Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_007386_030--Hb_065521_010 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_007386_030--Hb_008566_080 Hb_007017_100--Hb_007875_020 Hb_008175_050 Hb_008175_050 Hb_007017_100--Hb_008175_050 Hb_007017_100--Hb_065521_010 Hb_007017_100--Hb_007386_030 Hb_007017_100--Hb_000714_060 Hb_093218_010 Hb_093218_010 Hb_000714_060--Hb_093218_010 Hb_032260_060 Hb_032260_060 Hb_000714_060--Hb_032260_060 Hb_000951_090 Hb_000951_090 Hb_000714_060--Hb_000951_090 Hb_001473_060 Hb_001473_060 Hb_000714_060--Hb_001473_060 Hb_001104_020 Hb_001104_020 Hb_000714_060--Hb_001104_020 Hb_004282_010 Hb_004282_010 Hb_000014_080--Hb_004282_010 Hb_000956_070 Hb_000956_070 Hb_000014_080--Hb_000956_070 Hb_001568_010 Hb_001568_010 Hb_000014_080--Hb_001568_010 Hb_006501_100 Hb_006501_100 Hb_000014_080--Hb_006501_100 Hb_000014_080--Hb_007386_030 Hb_005766_010 Hb_005766_010 Hb_000594_160--Hb_005766_010 Hb_000594_160--Hb_001040_200 Hb_004079_100 Hb_004079_100 Hb_000594_160--Hb_004079_100 Hb_000866_190 Hb_000866_190 Hb_000594_160--Hb_000866_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307251 11.3921 43.8505 64.1664 0.235224 0.0993029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28181 0.0886495 0 55.325 26.3978

CAGE analysis