Hb_005731_090

Information

Type -
Description -
Location Contig5731: 104678-113881
Sequence    

Annotation

kegg
ID cic:CICLE_v10014024mg
description hypothetical protein
nr
ID XP_012067285.1
description PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L063
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26815 PE=4 SV=1
Gene Ontology
ID GO:0005515
description gyf domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49481: 104704-104813 , PASA_asmbl_49482: 107128-108875 , PASA_asmbl_49483: 107128-108110 , PASA_asmbl_49484: 108957-109125 , PASA_asmbl_49485: 109326-110740 , PASA_asmbl_49487: 111560-113341 , PASA_asmbl_49488: 113535-113777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_090 0.0 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
2 Hb_002174_020 0.0541771355 - - ring finger protein, putative [Ricinus communis]
3 Hb_004453_110 0.0545959206 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
4 Hb_008112_030 0.0582181896 - - conserved hypothetical protein [Ricinus communis]
5 Hb_067193_010 0.0645831859 - - -
6 Hb_000160_290 0.0657252827 - - unnamed protein product [Vitis vinifera]
7 Hb_030627_060 0.0684243723 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
8 Hb_000896_080 0.0685770797 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
9 Hb_001366_210 0.0690234161 - - cathepsin B, putative [Ricinus communis]
10 Hb_001417_050 0.0719041908 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
11 Hb_002329_040 0.0727698289 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
12 Hb_007635_030 0.0739017495 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
13 Hb_003044_020 0.0748646209 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
14 Hb_000429_220 0.0749095675 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
15 Hb_006252_020 0.0781118087 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
16 Hb_000261_030 0.0787664939 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
17 Hb_001454_280 0.0792331361 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
18 Hb_000209_070 0.0805023773 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
19 Hb_001473_090 0.0810072767 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
20 Hb_002044_170 0.0821376217 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]

Gene co-expression network

sample Hb_005731_090 Hb_005731_090 Hb_002174_020 Hb_002174_020 Hb_005731_090--Hb_002174_020 Hb_004453_110 Hb_004453_110 Hb_005731_090--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_005731_090--Hb_008112_030 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_000160_290 Hb_000160_290 Hb_005731_090--Hb_000160_290 Hb_030627_060 Hb_030627_060 Hb_005731_090--Hb_030627_060 Hb_002174_020--Hb_008112_030 Hb_001454_280 Hb_001454_280 Hb_002174_020--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_002174_020--Hb_006252_020 Hb_002174_020--Hb_000160_290 Hb_007635_030 Hb_007635_030 Hb_002174_020--Hb_007635_030 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_004453_110--Hb_002174_020 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_008112_030--Hb_007635_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_008112_030--Hb_006252_020 Hb_001221_150 Hb_001221_150 Hb_067193_010--Hb_001221_150 Hb_000856_140 Hb_000856_140 Hb_067193_010--Hb_000856_140 Hb_001307_080 Hb_001307_080 Hb_067193_010--Hb_001307_080 Hb_067193_010--Hb_004453_110 Hb_003040_020 Hb_003040_020 Hb_067193_010--Hb_003040_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_000446_120 Hb_000446_120 Hb_030627_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19041 5.78285 2.72997 4.8345 8.08615 7.67923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84956 2.49909 2.2877 4.7354 3.9392

CAGE analysis