Hb_005731_100

Information

Type -
Description -
Location Contig5731: 117350-120249
Sequence    

Annotation

kegg
ID rcu:RCOM_1447070
description monovalent cation:proton antiporter, putative
nr
ID XP_002512900.1
description monovalent cation:proton antiporter, putative [Ricinus communis]
swissprot
ID Q9SIT5
description Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1
trembl
ID B9RH41
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_1447070 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation h(+) antiporter 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49490: 118636-118791 , PASA_asmbl_49491: 119345-119715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_100 0.0 - - monovalent cation:proton antiporter, putative [Ricinus communis]
2 Hb_001124_140 0.0781973792 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
3 Hb_022425_050 0.0828848178 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
4 Hb_000046_480 0.0967036702 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
5 Hb_001153_100 0.0975298745 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
6 Hb_000334_050 0.1007230826 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
7 Hb_001754_120 0.1092078775 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
8 Hb_033152_110 0.1177273241 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
9 Hb_001865_010 0.1177972587 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
10 Hb_002026_030 0.1281448981 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
11 Hb_000310_060 0.131878211 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
12 Hb_003053_070 0.1321294828 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
13 Hb_002374_450 0.1323116029 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
14 Hb_005305_120 0.1331276125 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
15 Hb_010632_020 0.1333371241 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
16 Hb_001969_130 0.1344573957 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
17 Hb_004223_270 0.1352902751 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
18 Hb_002835_280 0.1360698299 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
19 Hb_000032_510 0.1364253265 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
20 Hb_000115_360 0.1366813149 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005731_100 Hb_005731_100 Hb_001124_140 Hb_001124_140 Hb_005731_100--Hb_001124_140 Hb_022425_050 Hb_022425_050 Hb_005731_100--Hb_022425_050 Hb_000046_480 Hb_000046_480 Hb_005731_100--Hb_000046_480 Hb_001153_100 Hb_001153_100 Hb_005731_100--Hb_001153_100 Hb_000334_050 Hb_000334_050 Hb_005731_100--Hb_000334_050 Hb_001754_120 Hb_001754_120 Hb_005731_100--Hb_001754_120 Hb_001969_130 Hb_001969_130 Hb_001124_140--Hb_001969_130 Hb_001124_140--Hb_022425_050 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010 Hb_022425_050--Hb_001865_010 Hb_004223_270 Hb_004223_270 Hb_022425_050--Hb_004223_270 Hb_022425_050--Hb_000334_050 Hb_022425_050--Hb_001969_130 Hb_033152_110 Hb_033152_110 Hb_000046_480--Hb_033152_110 Hb_000414_080 Hb_000414_080 Hb_000046_480--Hb_000414_080 Hb_000046_480--Hb_001124_140 Hb_006736_050 Hb_006736_050 Hb_000046_480--Hb_006736_050 Hb_001433_150 Hb_001433_150 Hb_000046_480--Hb_001433_150 Hb_000357_070 Hb_000357_070 Hb_001153_100--Hb_000357_070 Hb_001153_100--Hb_001433_150 Hb_002835_280 Hb_002835_280 Hb_001153_100--Hb_002835_280 Hb_001153_100--Hb_022425_050 Hb_034579_020 Hb_034579_020 Hb_001153_100--Hb_034579_020 Hb_000334_050--Hb_004223_270 Hb_000933_110 Hb_000933_110 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_001754_120--Hb_033152_110 Hb_000032_600 Hb_000032_600 Hb_001754_120--Hb_000032_600 Hb_000979_260 Hb_000979_260 Hb_001754_120--Hb_000979_260 Hb_000622_060 Hb_000622_060 Hb_001754_120--Hb_000622_060 Hb_001754_120--Hb_001124_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.080786 0.45539 0.863388 0.610692 0.0147705 0.0493449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197004 0.0704635 0.134295 0.341403 1.13799

CAGE analysis