Hb_005731_120

Information

Type transcription factor
Description TF Family: TCP
Location Contig5731: 152453-153406
Sequence    

Annotation

kegg
ID rcu:RCOM_1447120
description transcription factor, putative
nr
ID XP_012067277.1
description PREDICTED: transcription factor TCP20 [Jatropha curcas]
swissprot
ID Q9LSD5
description Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1
trembl
ID A0A067L058
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26810 PE=4 SV=1
Gene Ontology
ID GO:0000987
description transcription factor tcp20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49496: 149685-153249
cDNA
(Sanger)
(ID:Location)		 052_H02.ab1: 152349-152692

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_120 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
2 Hb_144528_010 0.0812524923 - - type II inositol 5-phosphatase, putative [Ricinus communis]
3 Hb_002235_170 0.0834312837 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
4 Hb_005291_030 0.08442199 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
5 Hb_005914_080 0.0863324925 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
6 Hb_000031_220 0.0895228253 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
7 Hb_020665_040 0.0916943736 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
8 Hb_001638_170 0.0926832046 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
9 Hb_031284_040 0.0927991895 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
10 Hb_000521_270 0.092829527 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
11 Hb_000127_040 0.09427042 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
12 Hb_000038_080 0.0952008267 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
13 Hb_022833_100 0.0975586384 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
14 Hb_002675_070 0.0980753635 - - PREDICTED: protein CASC3 [Jatropha curcas]
15 Hb_001492_020 0.0981684545 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
16 Hb_004881_020 0.0984806663 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
17 Hb_002271_020 0.0989416381 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
18 Hb_000083_160 0.1003413154 - - Cell division cycle protein, putative [Ricinus communis]
19 Hb_004032_150 0.1026506159 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
20 Hb_000785_080 0.1037861838 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_005731_120 Hb_005731_120 Hb_144528_010 Hb_144528_010 Hb_005731_120--Hb_144528_010 Hb_002235_170 Hb_002235_170 Hb_005731_120--Hb_002235_170 Hb_005291_030 Hb_005291_030 Hb_005731_120--Hb_005291_030 Hb_005914_080 Hb_005914_080 Hb_005731_120--Hb_005914_080 Hb_000031_220 Hb_000031_220 Hb_005731_120--Hb_000031_220 Hb_020665_040 Hb_020665_040 Hb_005731_120--Hb_020665_040 Hb_005269_040 Hb_005269_040 Hb_144528_010--Hb_005269_040 Hb_001538_130 Hb_001538_130 Hb_144528_010--Hb_001538_130 Hb_144528_010--Hb_005914_080 Hb_001287_080 Hb_001287_080 Hb_144528_010--Hb_001287_080 Hb_007881_030 Hb_007881_030 Hb_144528_010--Hb_007881_030 Hb_001492_020 Hb_001492_020 Hb_002235_170--Hb_001492_020 Hb_001314_010 Hb_001314_010 Hb_002235_170--Hb_001314_010 Hb_105328_020 Hb_105328_020 Hb_002235_170--Hb_105328_020 Hb_000127_040 Hb_000127_040 Hb_002235_170--Hb_000127_040 Hb_000862_030 Hb_000862_030 Hb_002235_170--Hb_000862_030 Hb_002213_070 Hb_002213_070 Hb_002235_170--Hb_002213_070 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_000009_240 Hb_000009_240 Hb_005914_080--Hb_000009_240 Hb_000023_280 Hb_000023_280 Hb_005914_080--Hb_000023_280 Hb_005188_080 Hb_005188_080 Hb_005914_080--Hb_005188_080 Hb_003940_040 Hb_003940_040 Hb_005914_080--Hb_003940_040 Hb_002982_040 Hb_002982_040 Hb_000031_220--Hb_002982_040 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_002054_040 Hb_002054_040 Hb_000031_220--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_000031_220--Hb_000260_220 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_144598_030 Hb_144598_030 Hb_020665_040--Hb_144598_030 Hb_020665_040--Hb_002271_020 Hb_002716_130 Hb_002716_130 Hb_020665_040--Hb_002716_130 Hb_000318_290 Hb_000318_290 Hb_020665_040--Hb_000318_290 Hb_033594_120 Hb_033594_120 Hb_020665_040--Hb_033594_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2157 28.8132 11.9404 33.7666 21.2206 59.2226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.2204 28.4523 20.3225 27.558 22.7531

CAGE analysis