Hb_005731_160

Information

Type -
Description -
Location Contig5731: 191099-199716
Sequence    

Annotation

kegg
ID tcc:TCM_017253
description Non-intrinsic ABC protein 14
nr
ID AIU41660.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8LEF6
description ABC transporter I family member 11, chloroplastic OS=Arabidopsis thaliana GN=ABCI11 PE=2 SV=1
trembl
ID A0A097P9S1
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI11 PE=2 SV=1
Gene Ontology
ID GO:0005524
description abc transporter i family member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49505: 191558-191782 , PASA_asmbl_49506: 195602-198899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_160 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_002811_010 0.0468953117 - - cysteine synthase, putative [Ricinus communis]
3 Hb_000613_110 0.0703583266 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
4 Hb_002758_010 0.078509611 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
5 Hb_000130_320 0.0792488711 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
6 Hb_055619_010 0.0806420038 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
7 Hb_000648_040 0.0839370293 - - unknown [Populus trichocarpa]
8 Hb_012150_030 0.0858641035 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_000120_290 0.0867928542 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
10 Hb_005127_030 0.0871429257 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_000212_440 0.0908563031 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_006538_120 0.0923614344 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
13 Hb_003106_190 0.0925517505 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
14 Hb_012627_040 0.0932635567 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
15 Hb_134849_010 0.0937171877 - - ATP synthase subunit d, putative [Ricinus communis]
16 Hb_000221_140 0.0948443818 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_032920_050 0.0968194442 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
18 Hb_000032_500 0.0973362857 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
19 Hb_035273_020 0.0998991168 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
20 Hb_003376_230 0.0999324173 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]

Gene co-expression network

sample Hb_005731_160 Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_005731_160--Hb_002811_010 Hb_000613_110 Hb_000613_110 Hb_005731_160--Hb_000613_110 Hb_002758_010 Hb_002758_010 Hb_005731_160--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_005731_160--Hb_000130_320 Hb_055619_010 Hb_055619_010 Hb_005731_160--Hb_055619_010 Hb_000648_040 Hb_000648_040 Hb_005731_160--Hb_000648_040 Hb_002811_010--Hb_055619_010 Hb_003106_190 Hb_003106_190 Hb_002811_010--Hb_003106_190 Hb_002811_010--Hb_000613_110 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290 Hb_000077_150 Hb_000077_150 Hb_002811_010--Hb_000077_150 Hb_032920_050 Hb_032920_050 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_000613_110--Hb_003106_190 Hb_003994_110 Hb_003994_110 Hb_000613_110--Hb_003994_110 Hb_002758_010--Hb_000130_320 Hb_002205_230 Hb_002205_230 Hb_002758_010--Hb_002205_230 Hb_001936_090 Hb_001936_090 Hb_002758_010--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010 Hb_000130_320--Hb_000648_040 Hb_001790_080 Hb_001790_080 Hb_000130_320--Hb_001790_080 Hb_000130_320--Hb_032920_050 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_000130_320--Hb_001936_090 Hb_007534_050 Hb_007534_050 Hb_055619_010--Hb_007534_050 Hb_001578_020 Hb_001578_020 Hb_055619_010--Hb_001578_020 Hb_004440_060 Hb_004440_060 Hb_055619_010--Hb_004440_060 Hb_004644_030 Hb_004644_030 Hb_055619_010--Hb_004644_030 Hb_001080_070 Hb_001080_070 Hb_000648_040--Hb_001080_070 Hb_000648_040--Hb_002758_010 Hb_000648_040--Hb_000613_110 Hb_003475_020 Hb_003475_020 Hb_000648_040--Hb_003475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69509 2.29388 4.60415 3.97756 2.53832 3.86798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73624 4.8484 2.31032 4.0456 10.296

CAGE analysis