Hb_005731_170

Information

Type -
Description -
Location Contig5731: 202679-206457
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011750mg
description hypothetical protein
nr
ID XP_007218447.1
description hypothetical protein PRUPE_ppa011750mg [Prunus persica]
swissprot
ID Q5RFQ0
description rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1
trembl
ID M5X2D5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011750mg PE=4 SV=1
Gene Ontology
ID GO:0032040
description rrna-processing protein fcf1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49507: 202681-206459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005731_170 0.0 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
2 Hb_003455_040 0.068887537 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
3 Hb_001998_050 0.0697869336 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
4 Hb_002374_390 0.0720234702 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
5 Hb_148200_010 0.0728695691 - - hypothetical protein 33 [Hevea brasiliensis]
6 Hb_003376_030 0.0732237875 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
7 Hb_001829_060 0.0735875025 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
8 Hb_029866_020 0.0747605595 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
9 Hb_002097_060 0.0776079853 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_001248_080 0.08041064 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
11 Hb_001141_030 0.0804774116 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
12 Hb_003938_180 0.0805740318 - - lesion inducing family protein [Populus trichocarpa]
13 Hb_000329_310 0.0818812038 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
14 Hb_001191_090 0.0821777472 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
15 Hb_000364_030 0.0833030691 - - RNA binding protein, putative [Ricinus communis]
16 Hb_003994_040 0.083305475 - - -
17 Hb_000181_300 0.0834212058 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
18 Hb_011628_040 0.0836139373 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
19 Hb_007943_090 0.0845353589 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_002471_080 0.0861481255 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005731_170 Hb_005731_170 Hb_003455_040 Hb_003455_040 Hb_005731_170--Hb_003455_040 Hb_001998_050 Hb_001998_050 Hb_005731_170--Hb_001998_050 Hb_002374_390 Hb_002374_390 Hb_005731_170--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_005731_170--Hb_148200_010 Hb_003376_030 Hb_003376_030 Hb_005731_170--Hb_003376_030 Hb_001829_060 Hb_001829_060 Hb_005731_170--Hb_001829_060 Hb_003455_040--Hb_003376_030 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_003455_040--Hb_000173_220 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_000181_300 Hb_000181_300 Hb_002374_390--Hb_000181_300 Hb_001016_090 Hb_001016_090 Hb_002374_390--Hb_001016_090 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_003185_050 Hb_003185_050 Hb_002374_390--Hb_003185_050 Hb_000905_180 Hb_000905_180 Hb_002374_390--Hb_000905_180 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_003376_030--Hb_002097_060 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_003376_030--Hb_002027_210 Hb_001109_020 Hb_001109_020 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8171 11.5909 15.4197 15.6914 17.6131 35.0805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.0896 78.3509 60.5557 21.1755 10.5467

CAGE analysis