Hb_005735_010

Information

Type -
Description -
Location Contig5735: 38833-41897
Sequence    

Annotation

kegg
ID rcu:RCOM_1176970
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID XP_002518029.1
description DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
swissprot
ID Q7Y1I7
description DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1
trembl
ID A0A0D3GN17
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna (cytosine-5)-methyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005735_010 0.0 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
2 Hb_002988_020 0.1816949298 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
3 Hb_017134_020 0.1969734166 - - -
4 Hb_000544_140 0.2043365978 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
5 Hb_179112_010 0.2135708502 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
6 Hb_000094_060 0.2636533388 - - -
7 Hb_001650_010 0.2778665953 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_174005_010 0.287978069 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
9 Hb_009265_020 0.2897268972 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000230_340 0.2965331336 - - Transcription elongation factor, putative [Ricinus communis]
11 Hb_000903_030 0.3020529081 - - -
12 Hb_032531_050 0.3080232101 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
13 Hb_000005_210 0.3106257802 - - -
14 Hb_000041_170 0.3106257802 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
15 Hb_000047_040 0.3106257802 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
16 Hb_000072_260 0.3106257802 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
17 Hb_000081_170 0.3106257802 - - -
18 Hb_000088_250 0.3106257802 - - -
19 Hb_000110_220 0.3106257802 - - -
20 Hb_000110_360 0.3106257802 - - -

Gene co-expression network

sample Hb_005735_010 Hb_005735_010 Hb_002988_020 Hb_002988_020 Hb_005735_010--Hb_002988_020 Hb_017134_020 Hb_017134_020 Hb_005735_010--Hb_017134_020 Hb_000544_140 Hb_000544_140 Hb_005735_010--Hb_000544_140 Hb_179112_010 Hb_179112_010 Hb_005735_010--Hb_179112_010 Hb_000094_060 Hb_000094_060 Hb_005735_010--Hb_000094_060 Hb_001650_010 Hb_001650_010 Hb_005735_010--Hb_001650_010 Hb_002988_020--Hb_179112_010 Hb_002988_020--Hb_017134_020 Hb_000903_030 Hb_000903_030 Hb_002988_020--Hb_000903_030 Hb_000230_340 Hb_000230_340 Hb_002988_020--Hb_000230_340 Hb_032531_050 Hb_032531_050 Hb_002988_020--Hb_032531_050 Hb_174005_010 Hb_174005_010 Hb_017134_020--Hb_174005_010 Hb_000510_070 Hb_000510_070 Hb_017134_020--Hb_000510_070 Hb_017134_020--Hb_000094_060 Hb_000005_210 Hb_000005_210 Hb_017134_020--Hb_000005_210 Hb_010626_020 Hb_010626_020 Hb_000544_140--Hb_010626_020 Hb_000370_010 Hb_000370_010 Hb_000544_140--Hb_000370_010 Hb_000544_140--Hb_001650_010 Hb_123521_010 Hb_123521_010 Hb_000544_140--Hb_123521_010 Hb_001021_060 Hb_001021_060 Hb_000544_140--Hb_001021_060 Hb_179112_010--Hb_000230_340 Hb_179112_010--Hb_000094_060 Hb_179112_010--Hb_017134_020 Hb_003952_140 Hb_003952_140 Hb_179112_010--Hb_003952_140 Hb_001125_020 Hb_001125_020 Hb_000094_060--Hb_001125_020 Hb_042026_010 Hb_042026_010 Hb_000094_060--Hb_042026_010 Hb_032419_020 Hb_032419_020 Hb_000094_060--Hb_032419_020 Hb_000094_060--Hb_174005_010 Hb_000696_320 Hb_000696_320 Hb_000094_060--Hb_000696_320 Hb_172112_010 Hb_172112_010 Hb_001650_010--Hb_172112_010 Hb_001650_010--Hb_010626_020 Hb_005656_060 Hb_005656_060 Hb_001650_010--Hb_005656_060 Hb_002890_230 Hb_002890_230 Hb_001650_010--Hb_002890_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.269499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0591981 0 0

CAGE analysis