Hb_005735_030

Information

Type -
Description -
Location Contig5735: 52012-52383
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49509: 52239-52560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005735_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_024714_030 0.0955937748 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
3 Hb_119583_010 0.0975039144 - - 60S ribosomal protein L12A [Hevea brasiliensis]
4 Hb_000236_300 0.0995565749 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
5 Hb_000847_070 0.1050126254 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
6 Hb_066807_010 0.1065419744 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
7 Hb_000365_360 0.1067559623 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_003633_130 0.1087008179 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
9 Hb_006637_060 0.1091834283 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
10 Hb_004204_200 0.1095329089 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
11 Hb_000622_100 0.1108331872 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
12 Hb_002014_080 0.1111292969 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
13 Hb_001221_230 0.1119075309 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000176_110 0.111927398 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
15 Hb_033642_020 0.1130214548 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
16 Hb_003638_140 0.1131195534 - - protein binding protein, putative [Ricinus communis]
17 Hb_034585_030 0.1139808281 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
18 Hb_000749_150 0.1153634531 - - -
19 Hb_004108_020 0.1156605245 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Populus euphratica]
20 Hb_002681_140 0.1158061832 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005735_030 Hb_005735_030 Hb_024714_030 Hb_024714_030 Hb_005735_030--Hb_024714_030 Hb_119583_010 Hb_119583_010 Hb_005735_030--Hb_119583_010 Hb_000236_300 Hb_000236_300 Hb_005735_030--Hb_000236_300 Hb_000847_070 Hb_000847_070 Hb_005735_030--Hb_000847_070 Hb_066807_010 Hb_066807_010 Hb_005735_030--Hb_066807_010 Hb_000365_360 Hb_000365_360 Hb_005735_030--Hb_000365_360 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_024714_030--Hb_000671_100 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_014568_030 Hb_014568_030 Hb_024714_030--Hb_014568_030 Hb_002215_050 Hb_002215_050 Hb_024714_030--Hb_002215_050 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030 Hb_007632_250 Hb_007632_250 Hb_119583_010--Hb_007632_250 Hb_003633_130 Hb_003633_130 Hb_119583_010--Hb_003633_130 Hb_003106_130 Hb_003106_130 Hb_119583_010--Hb_003106_130 Hb_004502_030 Hb_004502_030 Hb_119583_010--Hb_004502_030 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170 Hb_000209_090 Hb_000209_090 Hb_000236_300--Hb_000209_090 Hb_175612_010 Hb_175612_010 Hb_000236_300--Hb_175612_010 Hb_004204_200 Hb_004204_200 Hb_000236_300--Hb_004204_200 Hb_007534_040 Hb_007534_040 Hb_000236_300--Hb_007534_040 Hb_001754_170 Hb_001754_170 Hb_000236_300--Hb_001754_170 Hb_004096_170 Hb_004096_170 Hb_000847_070--Hb_004096_170 Hb_001514_020 Hb_001514_020 Hb_000847_070--Hb_001514_020 Hb_000847_070--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_026048_100 Hb_026048_100 Hb_066807_010--Hb_026048_100 Hb_002681_140 Hb_002681_140 Hb_066807_010--Hb_002681_140 Hb_004852_030 Hb_004852_030 Hb_066807_010--Hb_004852_030 Hb_032531_030 Hb_032531_030 Hb_066807_010--Hb_032531_030 Hb_066807_010--Hb_000365_360 Hb_001902_050 Hb_001902_050 Hb_066807_010--Hb_001902_050 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9755 2.70794 1.41309 4.31277 14.6666 20.259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.05176 9.94032 6.4937 2.83374 0.618771

CAGE analysis