Hb_005736_040

Information

Type -
Description -
Location Contig5736: 54560-62374
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_040 0.0 - - -
2 Hb_159085_010 0.2361920606 - - -
3 Hb_037964_010 0.2548612059 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
4 Hb_007904_270 0.2579653319 - - -
5 Hb_001865_110 0.2593956491 - - -
6 Hb_009467_030 0.2690365138 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
7 Hb_000008_260 0.269615892 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000501_020 0.2743235967 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
9 Hb_102438_010 0.2791338844 - - -
10 Hb_002768_020 0.2796058977 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
11 Hb_000445_220 0.2806879733 - - -
12 Hb_001186_080 0.2925478692 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
13 Hb_004917_050 0.293160732 - - -
14 Hb_006922_040 0.294347294 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
15 Hb_007741_040 0.295214266 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
16 Hb_032660_020 0.2988304797 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
17 Hb_004453_030 0.29928937 - - hypothetical protein POPTR_0006s26790g [Populus trichocarpa]
18 Hb_005222_020 0.3004775485 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
19 Hb_002685_180 0.3021907869 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_001427_140 0.3076335847 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005736_040 Hb_005736_040 Hb_159085_010 Hb_159085_010 Hb_005736_040--Hb_159085_010 Hb_037964_010 Hb_037964_010 Hb_005736_040--Hb_037964_010 Hb_007904_270 Hb_007904_270 Hb_005736_040--Hb_007904_270 Hb_001865_110 Hb_001865_110 Hb_005736_040--Hb_001865_110 Hb_009467_030 Hb_009467_030 Hb_005736_040--Hb_009467_030 Hb_000008_260 Hb_000008_260 Hb_005736_040--Hb_000008_260 Hb_039305_010 Hb_039305_010 Hb_159085_010--Hb_039305_010 Hb_000736_010 Hb_000736_010 Hb_159085_010--Hb_000736_010 Hb_003773_030 Hb_003773_030 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_000067_020 Hb_000067_020 Hb_159085_010--Hb_000067_020 Hb_037964_010--Hb_000008_260 Hb_037964_010--Hb_009467_030 Hb_001787_040 Hb_001787_040 Hb_037964_010--Hb_001787_040 Hb_006452_150 Hb_006452_150 Hb_037964_010--Hb_006452_150 Hb_000200_320 Hb_000200_320 Hb_037964_010--Hb_000200_320 Hb_007904_270--Hb_000008_260 Hb_007904_270--Hb_009467_030 Hb_102438_010 Hb_102438_010 Hb_007904_270--Hb_102438_010 Hb_007904_270--Hb_159085_010 Hb_004917_050 Hb_004917_050 Hb_007904_270--Hb_004917_050 Hb_007904_270--Hb_000736_010 Hb_005222_020 Hb_005222_020 Hb_001865_110--Hb_005222_020 Hb_106029_010 Hb_106029_010 Hb_001865_110--Hb_106029_010 Hb_000501_020 Hb_000501_020 Hb_001865_110--Hb_000501_020 Hb_141408_010 Hb_141408_010 Hb_001865_110--Hb_141408_010 Hb_148262_020 Hb_148262_020 Hb_001865_110--Hb_148262_020 Hb_000270_150 Hb_000270_150 Hb_001865_110--Hb_000270_150 Hb_009467_030--Hb_000008_260 Hb_009467_030--Hb_102438_010 Hb_009467_030--Hb_004917_050 Hb_001386_080 Hb_001386_080 Hb_009467_030--Hb_001386_080 Hb_000979_050 Hb_000979_050 Hb_009467_030--Hb_000979_050 Hb_000008_260--Hb_102438_010 Hb_000008_260--Hb_004917_050 Hb_000008_260--Hb_000979_050 Hb_000008_260--Hb_159085_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175987 0 0.149271 0 0.18064 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24771 0.655925 0 0 0

CAGE analysis