Hb_005736_050

Information

Type -
Description -
Location Contig5736: 65242-68296
Sequence    

Annotation

kegg
ID pmum:103327145
description mitogen-activated protein kinase kinase kinase YODA
nr
ID XP_012066102.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A0D2PPU2
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G083400 PE=4 SV=1
Gene Ontology
ID GO:0016772
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49518: 66069-68520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_050 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
2 Hb_003120_070 0.1149315544 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000853_220 0.1374618495 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
4 Hb_000197_290 0.1434040986 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
5 Hb_012753_040 0.1467623416 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
6 Hb_012038_010 0.1574635477 - - phospholipid-transporting atpase, putative [Ricinus communis]
7 Hb_000922_220 0.1585123141 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
8 Hb_001488_270 0.1593488261 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
9 Hb_000320_460 0.1596210393 - - PREDICTED: uncharacterized protein LOC105650098 [Jatropha curcas]
10 Hb_014720_020 0.1596975842 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
11 Hb_000751_140 0.1640222606 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
12 Hb_002774_150 0.1642700613 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
13 Hb_009674_080 0.1654805441 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
14 Hb_000732_070 0.1663705695 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_116420_040 0.166894168 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000979_240 0.1682839389 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
17 Hb_003895_020 0.1718550701 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
18 Hb_000334_130 0.1721625241 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
19 Hb_000218_020 0.1723023377 - - synaptosomal associated protein, putative [Ricinus communis]
20 Hb_007813_030 0.1726694649 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]

Gene co-expression network

sample Hb_005736_050 Hb_005736_050 Hb_003120_070 Hb_003120_070 Hb_005736_050--Hb_003120_070 Hb_000853_220 Hb_000853_220 Hb_005736_050--Hb_000853_220 Hb_000197_290 Hb_000197_290 Hb_005736_050--Hb_000197_290 Hb_012753_040 Hb_012753_040 Hb_005736_050--Hb_012753_040 Hb_012038_010 Hb_012038_010 Hb_005736_050--Hb_012038_010 Hb_000922_220 Hb_000922_220 Hb_005736_050--Hb_000922_220 Hb_014720_020 Hb_014720_020 Hb_003120_070--Hb_014720_020 Hb_002005_120 Hb_002005_120 Hb_003120_070--Hb_002005_120 Hb_000751_140 Hb_000751_140 Hb_003120_070--Hb_000751_140 Hb_000526_060 Hb_000526_060 Hb_003120_070--Hb_000526_060 Hb_000117_070 Hb_000117_070 Hb_003120_070--Hb_000117_070 Hb_003120_070--Hb_000197_290 Hb_013405_180 Hb_013405_180 Hb_000853_220--Hb_013405_180 Hb_001396_070 Hb_001396_070 Hb_000853_220--Hb_001396_070 Hb_002248_130 Hb_002248_130 Hb_000853_220--Hb_002248_130 Hb_006615_030 Hb_006615_030 Hb_000853_220--Hb_006615_030 Hb_011930_100 Hb_011930_100 Hb_000853_220--Hb_011930_100 Hb_002248_120 Hb_002248_120 Hb_000853_220--Hb_002248_120 Hb_007813_030 Hb_007813_030 Hb_000197_290--Hb_007813_030 Hb_001488_270 Hb_001488_270 Hb_000197_290--Hb_001488_270 Hb_000574_510 Hb_000574_510 Hb_000197_290--Hb_000574_510 Hb_000062_470 Hb_000062_470 Hb_000197_290--Hb_000062_470 Hb_003604_040 Hb_003604_040 Hb_000197_290--Hb_003604_040 Hb_000015_160 Hb_000015_160 Hb_012753_040--Hb_000015_160 Hb_009674_080 Hb_009674_080 Hb_012753_040--Hb_009674_080 Hb_000991_050 Hb_000991_050 Hb_012753_040--Hb_000991_050 Hb_002774_150 Hb_002774_150 Hb_012753_040--Hb_002774_150 Hb_012753_040--Hb_000922_220 Hb_012753_040--Hb_003120_070 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_002942_110 Hb_002942_110 Hb_012038_010--Hb_002942_110 Hb_012038_010--Hb_000526_060 Hb_004875_010 Hb_004875_010 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_002804_030 Hb_002804_030 Hb_000922_220--Hb_002804_030 Hb_000434_010 Hb_000434_010 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.908557 4.80221 1.49238 2.045 2.33981 2.30849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.484738 0.550884 0.0799821 0.667035 2.3611

CAGE analysis