Hb_005736_060

Information

Type -
Description -
Location Contig5736: 69151-71977
Sequence    

Annotation

kegg
ID rcu:RCOM_0559400
description Shwachman-Bodian-Diamond syndrome protein, putative
nr
ID XP_012066099.1
description PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
swissprot
ID Q3SWZ6
description Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1
trembl
ID A0A067L741
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25254 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribosome maturation protein sbds

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49519: 69190-71960
cDNA
(Sanger)
(ID:Location)		 022_A21.ab1: 70789-71960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_060 0.0 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
2 Hb_000307_090 0.0609878775 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
3 Hb_159809_020 0.0754119051 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_001421_060 0.0761802119 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
5 Hb_004129_040 0.0763724935 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
6 Hb_001616_040 0.0775006419 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
7 Hb_002963_010 0.0781362513 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
8 Hb_002061_040 0.078527931 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_000373_120 0.079230618 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
10 Hb_006816_530 0.0795667554 - - 60S ribosomal protein L18, putative [Ricinus communis]
11 Hb_003599_040 0.0797637443 - - unnamed protein product [Vitis vinifera]
12 Hb_000574_480 0.0799895992 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
13 Hb_002713_070 0.0820795037 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
14 Hb_002477_140 0.0839348533 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
15 Hb_000009_460 0.0841101761 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000135_060 0.0871905593 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
17 Hb_000342_100 0.087371116 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
18 Hb_000384_100 0.0894726077 - - hydrolase, putative [Ricinus communis]
19 Hb_004375_100 0.0897584553 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
20 Hb_002805_220 0.0906618285 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005736_060 Hb_005736_060 Hb_000307_090 Hb_000307_090 Hb_005736_060--Hb_000307_090 Hb_159809_020 Hb_159809_020 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_002963_010 Hb_002963_010 Hb_005736_060--Hb_002963_010 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_001235_190 Hb_001235_190 Hb_000307_090--Hb_001235_190 Hb_000307_090--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_000307_090--Hb_003599_040 Hb_159809_020--Hb_002963_010 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_002713_070 Hb_002713_070 Hb_004129_040--Hb_002713_070 Hb_004129_040--Hb_000307_090 Hb_000111_340 Hb_000111_340 Hb_004129_040--Hb_000111_340 Hb_000438_220 Hb_000438_220 Hb_004129_040--Hb_000438_220 Hb_000136_170 Hb_000136_170 Hb_004129_040--Hb_000136_170 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7808 14.2596 7.70268 15.2088 16.5061 22.9838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.8436 52.8035 22.1519 21.732 12.6204

CAGE analysis