Hb_005736_070

Information

Type transcription factor
Description TF Family: GRAS
Location Contig5736: 73494-75254
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07430g
description POPTRDRAFT_816239; SCARECROW-LIKE 1 family protein
nr
ID XP_012066104.1
description PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
swissprot
ID Q9SDQ3
description Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1
trembl
ID A0A067LEX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25256 PE=4 SV=1
Gene Ontology
ID GO:0003700
description scarecrow-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49521: 75282-77162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_070 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
2 Hb_011214_140 0.1604067417 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_001009_110 0.1790137864 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
4 Hb_006501_170 0.1817488733 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
5 Hb_008948_080 0.1839991006 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
6 Hb_001825_020 0.1885431763 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_010620_020 0.1900766879 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_000215_340 0.1954697 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
9 Hb_001879_050 0.2023853744 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_010080_020 0.2030919885 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
11 Hb_000668_160 0.2035499505 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
12 Hb_051100_010 0.2035677191 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
13 Hb_001073_060 0.2097266217 - - phosphate transporter 1 [Hevea brasiliensis]
14 Hb_004462_020 0.2109951764 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
15 Hb_001008_160 0.2119221995 - - -
16 Hb_003371_140 0.2125151303 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
17 Hb_011791_010 0.2146380816 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
18 Hb_073119_010 0.2172096239 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
19 Hb_002783_300 0.2183246436 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000333_130 0.2194763218 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005736_070 Hb_005736_070 Hb_011214_140 Hb_011214_140 Hb_005736_070--Hb_011214_140 Hb_001009_110 Hb_001009_110 Hb_005736_070--Hb_001009_110 Hb_006501_170 Hb_006501_170 Hb_005736_070--Hb_006501_170 Hb_008948_080 Hb_008948_080 Hb_005736_070--Hb_008948_080 Hb_001825_020 Hb_001825_020 Hb_005736_070--Hb_001825_020 Hb_010620_020 Hb_010620_020 Hb_005736_070--Hb_010620_020 Hb_011214_140--Hb_001009_110 Hb_000030_260 Hb_000030_260 Hb_011214_140--Hb_000030_260 Hb_000343_260 Hb_000343_260 Hb_011214_140--Hb_000343_260 Hb_000521_300 Hb_000521_300 Hb_011214_140--Hb_000521_300 Hb_000086_370 Hb_000086_370 Hb_011214_140--Hb_000086_370 Hb_011214_140--Hb_006501_170 Hb_002219_090 Hb_002219_090 Hb_001009_110--Hb_002219_090 Hb_149056_010 Hb_149056_010 Hb_001009_110--Hb_149056_010 Hb_000333_130 Hb_000333_130 Hb_001009_110--Hb_000333_130 Hb_118777_010 Hb_118777_010 Hb_001009_110--Hb_118777_010 Hb_009778_030 Hb_009778_030 Hb_001009_110--Hb_009778_030 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_006970_150 Hb_006970_150 Hb_008948_080--Hb_006970_150 Hb_000723_120 Hb_000723_120 Hb_008948_080--Hb_000723_120 Hb_008948_080--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_008948_080--Hb_000120_070 Hb_004459_110 Hb_004459_110 Hb_008948_080--Hb_004459_110 Hb_001825_020--Hb_010620_020 Hb_001825_020--Hb_006501_170 Hb_001195_730 Hb_001195_730 Hb_001825_020--Hb_001195_730 Hb_002284_030 Hb_002284_030 Hb_001825_020--Hb_002284_030 Hb_001825_020--Hb_011214_140 Hb_129399_010 Hb_129399_010 Hb_010620_020--Hb_129399_010 Hb_000146_110 Hb_000146_110 Hb_010620_020--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_010620_020--Hb_000003_620 Hb_010620_020--Hb_009778_030 Hb_001363_030 Hb_001363_030 Hb_010620_020--Hb_001363_030 Hb_000111_130 Hb_000111_130 Hb_010620_020--Hb_000111_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436574 96.0939 6.91364 14.3489 0.154401 0.34566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.650432 1.39197 13.768 37.3563 10.6422

CAGE analysis