Hb_005736_080

Information

Type -
Description -
Location Contig5736: 94067-95302
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID XP_006436321.1
description hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_080 0.0 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
2 Hb_141990_030 0.0038358547 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
3 Hb_001105_140 0.0072968009 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
4 Hb_003058_160 0.0296483197 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004924_040 0.0298863948 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
6 Hb_073467_010 0.0337774506 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
7 Hb_000103_380 0.0455649456 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
8 Hb_002876_010 0.0514025929 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_000832_360 0.0700134941 - - -
10 Hb_000224_250 0.0728950701 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
11 Hb_147069_010 0.096790675 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
12 Hb_062503_010 0.1195207646 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001205_050 0.1256580203 - - -
14 Hb_100404_010 0.1277112404 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
15 Hb_005183_060 0.1394762436 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
16 Hb_001761_160 0.1420480918 - - hypothetical protein VITISV_019364 [Vitis vinifera]
17 Hb_101778_010 0.1622769838 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_184798_060 0.1679745015 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008225_020 0.1715857446 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
20 Hb_080033_020 0.1754822355 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_005736_080 Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_005736_080--Hb_141990_030 Hb_001105_140 Hb_001105_140 Hb_005736_080--Hb_001105_140 Hb_003058_160 Hb_003058_160 Hb_005736_080--Hb_003058_160 Hb_004924_040 Hb_004924_040 Hb_005736_080--Hb_004924_040 Hb_073467_010 Hb_073467_010 Hb_005736_080--Hb_073467_010 Hb_000103_380 Hb_000103_380 Hb_005736_080--Hb_000103_380 Hb_141990_030--Hb_001105_140 Hb_141990_030--Hb_003058_160 Hb_141990_030--Hb_004924_040 Hb_141990_030--Hb_073467_010 Hb_141990_030--Hb_000103_380 Hb_001105_140--Hb_003058_160 Hb_001105_140--Hb_004924_040 Hb_001105_140--Hb_000103_380 Hb_001105_140--Hb_073467_010 Hb_003058_160--Hb_004924_040 Hb_003058_160--Hb_073467_010 Hb_003058_160--Hb_000103_380 Hb_004924_040--Hb_073467_010 Hb_004924_040--Hb_000103_380 Hb_073467_010--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_000103_380--Hb_000832_360 Hb_002876_010 Hb_002876_010 Hb_000103_380--Hb_002876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0187024 0.0139713 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0694089

CAGE analysis