Hb_005736_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig5736: 113802-115416
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20870g
description POPTRDRAFT_559321; putative MYB transcription factor family protein
nr
ID BAR45579.1
description MYB transcriptional factor [Populus tremula x Populus tremuloides]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9H7M6
description Putative MYB transcription factor family protein OS=Populus trichocarpa GN=POPTR_0005s20870g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor laf1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_110 0.0 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
2 Hb_002835_120 0.0963357685 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
3 Hb_006618_100 0.0972186427 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
4 Hb_145975_010 0.107186353 - - cytochrome P450, putative [Ricinus communis]
5 Hb_011344_050 0.1200250071 - - PREDICTED: 21 kDa protein [Jatropha curcas]
6 Hb_103632_010 0.1240501836 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_000367_320 0.128315444 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002837_150 0.1302382736 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
9 Hb_022597_010 0.130673769 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
10 Hb_000349_280 0.1310768733 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000638_110 0.131938024 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
12 Hb_027411_030 0.1352193492 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_010217_020 0.1373039511 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
14 Hb_001141_010 0.1380070987 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
15 Hb_004757_010 0.1385340728 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
16 Hb_072153_010 0.1439859321 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
17 Hb_005245_030 0.1460769022 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
18 Hb_004617_010 0.1474939593 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
19 Hb_012217_010 0.1496211442 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
20 Hb_001322_010 0.1496994046 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]

Gene co-expression network

sample Hb_005736_110 Hb_005736_110 Hb_002835_120 Hb_002835_120 Hb_005736_110--Hb_002835_120 Hb_006618_100 Hb_006618_100 Hb_005736_110--Hb_006618_100 Hb_145975_010 Hb_145975_010 Hb_005736_110--Hb_145975_010 Hb_011344_050 Hb_011344_050 Hb_005736_110--Hb_011344_050 Hb_103632_010 Hb_103632_010 Hb_005736_110--Hb_103632_010 Hb_000367_320 Hb_000367_320 Hb_005736_110--Hb_000367_320 Hb_001141_010 Hb_001141_010 Hb_002835_120--Hb_001141_010 Hb_002837_150 Hb_002837_150 Hb_002835_120--Hb_002837_150 Hb_000638_110 Hb_000638_110 Hb_002835_120--Hb_000638_110 Hb_002835_120--Hb_145975_010 Hb_000349_280 Hb_000349_280 Hb_002835_120--Hb_000349_280 Hb_010217_020 Hb_010217_020 Hb_006618_100--Hb_010217_020 Hb_006618_100--Hb_145975_010 Hb_006618_100--Hb_000349_280 Hb_004757_010 Hb_004757_010 Hb_006618_100--Hb_004757_010 Hb_004158_040 Hb_004158_040 Hb_006618_100--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_006618_100--Hb_001579_160 Hb_145975_010--Hb_004757_010 Hb_001343_060 Hb_001343_060 Hb_145975_010--Hb_001343_060 Hb_027411_030 Hb_027411_030 Hb_145975_010--Hb_027411_030 Hb_001141_430 Hb_001141_430 Hb_145975_010--Hb_001141_430 Hb_001269_430 Hb_001269_430 Hb_145975_010--Hb_001269_430 Hb_011344_050--Hb_004757_010 Hb_011344_050--Hb_027411_030 Hb_010863_020 Hb_010863_020 Hb_011344_050--Hb_010863_020 Hb_011344_050--Hb_006618_100 Hb_013399_060 Hb_013399_060 Hb_011344_050--Hb_013399_060 Hb_001296_010 Hb_001296_010 Hb_011344_050--Hb_001296_010 Hb_103632_010--Hb_002837_150 Hb_103632_010--Hb_001141_010 Hb_103632_010--Hb_000638_110 Hb_001255_030 Hb_001255_030 Hb_103632_010--Hb_001255_030 Hb_004757_040 Hb_004757_040 Hb_103632_010--Hb_004757_040 Hb_000007_020 Hb_000007_020 Hb_103632_010--Hb_000007_020 Hb_003126_120 Hb_003126_120 Hb_000367_320--Hb_003126_120 Hb_034688_030 Hb_034688_030 Hb_000367_320--Hb_034688_030 Hb_002000_100 Hb_002000_100 Hb_000367_320--Hb_002000_100 Hb_022693_090 Hb_022693_090 Hb_000367_320--Hb_022693_090 Hb_001360_020 Hb_001360_020 Hb_000367_320--Hb_001360_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.5843 0.177153 9.1874 0.0491976 0.180892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.566684 1.10702

CAGE analysis