Hb_005738_010

Information

Type -
Description -
Location Contig5738: 13728-14458
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005738_010 0.0 - - -
2 Hb_004767_090 0.1387977464 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
3 Hb_000343_190 0.1458802958 - - PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
4 Hb_000264_010 0.156813836 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
5 Hb_008643_060 0.1668149247 - - unnamed protein product [Coffea canephora]
6 Hb_002601_120 0.1685033448 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
7 Hb_017711_020 0.1728231085 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
8 Hb_000021_040 0.1742064773 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
9 Hb_188964_010 0.1748941626 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
10 Hb_020805_010 0.1775522684 - - protein with unknown function [Ricinus communis]
11 Hb_093432_010 0.1804057093 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
12 Hb_001102_260 0.180615087 - - hypothetical protein L484_019841 [Morus notabilis]
13 Hb_000441_180 0.1808276809 - - Early endosome antigen, putative [Ricinus communis]
14 Hb_017987_020 0.181874821 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000465_170 0.184030864 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
16 Hb_000739_220 0.1841152183 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
17 Hb_008725_150 0.1842288316 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_005228_080 0.1848087764 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
19 Hb_007192_080 0.1852478738 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
20 Hb_002341_030 0.1864607891 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]

Gene co-expression network

sample Hb_005738_010 Hb_005738_010 Hb_004767_090 Hb_004767_090 Hb_005738_010--Hb_004767_090 Hb_000343_190 Hb_000343_190 Hb_005738_010--Hb_000343_190 Hb_000264_010 Hb_000264_010 Hb_005738_010--Hb_000264_010 Hb_008643_060 Hb_008643_060 Hb_005738_010--Hb_008643_060 Hb_002601_120 Hb_002601_120 Hb_005738_010--Hb_002601_120 Hb_017711_020 Hb_017711_020 Hb_005738_010--Hb_017711_020 Hb_004767_090--Hb_000343_190 Hb_004567_100 Hb_004567_100 Hb_004767_090--Hb_004567_100 Hb_000755_080 Hb_000755_080 Hb_004767_090--Hb_000755_080 Hb_005228_080 Hb_005228_080 Hb_004767_090--Hb_005228_080 Hb_004767_090--Hb_017711_020 Hb_000021_040 Hb_000021_040 Hb_000343_190--Hb_000021_040 Hb_000768_190 Hb_000768_190 Hb_000343_190--Hb_000768_190 Hb_005211_100 Hb_005211_100 Hb_000343_190--Hb_005211_100 Hb_009535_020 Hb_009535_020 Hb_000343_190--Hb_009535_020 Hb_000059_150 Hb_000059_150 Hb_000343_190--Hb_000059_150 Hb_000264_010--Hb_000021_040 Hb_064903_010 Hb_064903_010 Hb_000264_010--Hb_064903_010 Hb_067193_010 Hb_067193_010 Hb_000264_010--Hb_067193_010 Hb_001301_090 Hb_001301_090 Hb_000264_010--Hb_001301_090 Hb_000101_350 Hb_000101_350 Hb_000264_010--Hb_000101_350 Hb_000951_110 Hb_000951_110 Hb_000264_010--Hb_000951_110 Hb_004204_080 Hb_004204_080 Hb_008643_060--Hb_004204_080 Hb_008643_060--Hb_002601_120 Hb_000270_780 Hb_000270_780 Hb_008643_060--Hb_000270_780 Hb_001575_080 Hb_001575_080 Hb_008643_060--Hb_001575_080 Hb_002890_030 Hb_002890_030 Hb_008643_060--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_008643_060--Hb_000861_070 Hb_002601_120--Hb_004204_080 Hb_001019_170 Hb_001019_170 Hb_002601_120--Hb_001019_170 Hb_008714_020 Hb_008714_020 Hb_002601_120--Hb_008714_020 Hb_002200_130 Hb_002200_130 Hb_002601_120--Hb_002200_130 Hb_000046_450 Hb_000046_450 Hb_002601_120--Hb_000046_450 Hb_000270_140 Hb_000270_140 Hb_017711_020--Hb_000270_140 Hb_017711_020--Hb_004567_100 Hb_000003_790 Hb_000003_790 Hb_017711_020--Hb_000003_790 Hb_000940_040 Hb_000940_040 Hb_017711_020--Hb_000940_040 Hb_000152_560 Hb_000152_560 Hb_017711_020--Hb_000152_560 Hb_007441_070 Hb_007441_070 Hb_017711_020--Hb_007441_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23092 5.58669 1.99373 3.24284 9.30401 12.7546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09226 1.68199 4.93397 2.20729 1.58936

CAGE analysis