Hb_005739_010

Information

Type -
Description -
Location Contig5739: 12888-16954
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11820g
description POPTRDRAFT_578767; hypothetical protein
nr
ID KDP38663.1
description hypothetical protein JCGZ_04016 [Jatropha curcas]
swissprot
ID P93338
description NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1
trembl
ID A0A067KUM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04016 PE=3 SV=1
Gene Ontology
ID GO:0008886
description nadp-dependent glyceraldehyde-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49529: 12999-16908 , PASA_asmbl_49530: 13063-13841
cDNA
(Sanger)
(ID:Location)		 007_G08.ab1: 13040-15492 , 025_D21.ab1: 12999-15463 , 044_B17.ab1: 12999-15461 , 048_C24.ab1: 12999-15461

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005739_010 0.0 - - hypothetical protein JCGZ_04016 [Jatropha curcas]
2 Hb_002716_150 0.1479301465 - - starch synthase isoform I [Manihot esculenta]
3 Hb_031042_040 0.1529447049 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
4 Hb_002900_140 0.1538551261 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
5 Hb_135810_010 0.1569120927 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
6 Hb_000065_070 0.1582990138 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
7 Hb_000630_040 0.1610975966 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
8 Hb_004286_040 0.161760718 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
9 Hb_002027_220 0.1623378941 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_004705_040 0.1671226532 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
11 Hb_002759_250 0.1682049985 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
12 Hb_001673_010 0.1696662284 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
13 Hb_000990_080 0.1712703027 - - gulonolactone oxidase, putative [Ricinus communis]
14 Hb_000003_650 0.1718017682 - - malic enzyme, putative [Ricinus communis]
15 Hb_000096_090 0.1751753581 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
16 Hb_000138_190 0.1755464099 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
17 Hb_000316_050 0.1755599549 - - enoyl-ACP reductase [Vernicia fordii]
18 Hb_003376_100 0.17707807 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
19 Hb_000649_050 0.1775772114 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
20 Hb_000997_270 0.1782048877 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005739_010 Hb_005739_010 Hb_002716_150 Hb_002716_150 Hb_005739_010--Hb_002716_150 Hb_031042_040 Hb_031042_040 Hb_005739_010--Hb_031042_040 Hb_002900_140 Hb_002900_140 Hb_005739_010--Hb_002900_140 Hb_135810_010 Hb_135810_010 Hb_005739_010--Hb_135810_010 Hb_000065_070 Hb_000065_070 Hb_005739_010--Hb_000065_070 Hb_000630_040 Hb_000630_040 Hb_005739_010--Hb_000630_040 Hb_002716_150--Hb_135810_010 Hb_014568_030 Hb_014568_030 Hb_002716_150--Hb_014568_030 Hb_001855_010 Hb_001855_010 Hb_002716_150--Hb_001855_010 Hb_002716_150--Hb_031042_040 Hb_003055_050 Hb_003055_050 Hb_002716_150--Hb_003055_050 Hb_003376_100 Hb_003376_100 Hb_002716_150--Hb_003376_100 Hb_002955_030 Hb_002955_030 Hb_031042_040--Hb_002955_030 Hb_010174_130 Hb_010174_130 Hb_031042_040--Hb_010174_130 Hb_002377_040 Hb_002377_040 Hb_031042_040--Hb_002377_040 Hb_000085_340 Hb_000085_340 Hb_031042_040--Hb_000085_340 Hb_000034_140 Hb_000034_140 Hb_031042_040--Hb_000034_140 Hb_029921_010 Hb_029921_010 Hb_002900_140--Hb_029921_010 Hb_002900_140--Hb_000065_070 Hb_005892_060 Hb_005892_060 Hb_002900_140--Hb_005892_060 Hb_000997_270 Hb_000997_270 Hb_002900_140--Hb_000997_270 Hb_002900_140--Hb_000630_040 Hb_002027_220 Hb_002027_220 Hb_135810_010--Hb_002027_220 Hb_000258_080 Hb_000258_080 Hb_135810_010--Hb_000258_080 Hb_135810_010--Hb_031042_040 Hb_011282_030 Hb_011282_030 Hb_135810_010--Hb_011282_030 Hb_000529_160 Hb_000529_160 Hb_135810_010--Hb_000529_160 Hb_000003_650 Hb_000003_650 Hb_000065_070--Hb_000003_650 Hb_000138_190 Hb_000138_190 Hb_000065_070--Hb_000138_190 Hb_017098_030 Hb_017098_030 Hb_000065_070--Hb_017098_030 Hb_000065_070--Hb_031042_040 Hb_002054_010 Hb_002054_010 Hb_000630_040--Hb_002054_010 Hb_000630_070 Hb_000630_070 Hb_000630_040--Hb_000630_070 Hb_101832_010 Hb_101832_010 Hb_000630_040--Hb_101832_010 Hb_000316_050 Hb_000316_050 Hb_000630_040--Hb_000316_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
716.073 43.8562 144.573 131.725 250.173 631.916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
660.13 121.338 339.796 36.6749 203.931

CAGE analysis