Hb_005741_020

Information

Type -
Description -
Location Contig5741: 37940-40864
Sequence    

Annotation

kegg
ID tcc:TCM_020279
description Polyamine-modulated factor 1-binding protein 1, putative
nr
ID XP_012074633.1
description PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10318 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49607: 37890-40772 , PASA_asmbl_49608: 37926-40801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005741_020 0.0 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
2 Hb_005271_070 0.0866442927 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
3 Hb_001623_370 0.0885675486 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011609_030 0.0911070537 - - conserved hypothetical protein 13 [Hevea brasiliensis]
5 Hb_000714_020 0.0927042659 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
6 Hb_001956_120 0.094514447 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004232_010 0.0963003546 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
8 Hb_004374_010 0.100031135 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
9 Hb_002619_010 0.1048854748 - - -
10 Hb_004070_030 0.1097052574 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_000258_410 0.1183740486 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
12 Hb_006637_060 0.1190029349 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
13 Hb_011537_040 0.119138949 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
14 Hb_000265_150 0.1205985572 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
15 Hb_001663_110 0.1209305169 - - RNA binding protein, putative [Ricinus communis]
16 Hb_004502_030 0.1213254245 - - unknown [Populus trichocarpa]
17 Hb_002078_430 0.1218981563 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
18 Hb_000976_270 0.1219591681 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
19 Hb_001514_020 0.1226396087 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
20 Hb_017098_030 0.1226632692 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]

Gene co-expression network

sample Hb_005741_020 Hb_005741_020 Hb_005271_070 Hb_005271_070 Hb_005741_020--Hb_005271_070 Hb_001623_370 Hb_001623_370 Hb_005741_020--Hb_001623_370 Hb_011609_030 Hb_011609_030 Hb_005741_020--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_005741_020--Hb_000714_020 Hb_001956_120 Hb_001956_120 Hb_005741_020--Hb_001956_120 Hb_004232_010 Hb_004232_010 Hb_005741_020--Hb_004232_010 Hb_011537_040 Hb_011537_040 Hb_005271_070--Hb_011537_040 Hb_000258_410 Hb_000258_410 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_004374_010 Hb_004374_010 Hb_005271_070--Hb_004374_010 Hb_001623_370--Hb_000714_020 Hb_001514_020 Hb_001514_020 Hb_001623_370--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_001623_370--Hb_004502_030 Hb_001623_370--Hb_011609_030 Hb_007992_030 Hb_007992_030 Hb_001623_370--Hb_007992_030 Hb_001663_110 Hb_001663_110 Hb_001623_370--Hb_001663_110 Hb_011609_030--Hb_000714_020 Hb_011609_030--Hb_004232_010 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_011609_030--Hb_001956_120 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_000714_020--Hb_004374_010 Hb_001956_120--Hb_004374_010 Hb_000347_080 Hb_000347_080 Hb_001956_120--Hb_000347_080 Hb_000976_270 Hb_000976_270 Hb_001956_120--Hb_000976_270 Hb_001956_120--Hb_011537_040 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001956_120--Hb_001663_110 Hb_004232_010--Hb_000500_290 Hb_004232_010--Hb_000714_020 Hb_004070_030 Hb_004070_030 Hb_004232_010--Hb_004070_030 Hb_000282_150 Hb_000282_150 Hb_004232_010--Hb_000282_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.473 37.0392 20.5128 15.6159 95.2874 144.163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.41 71.1233 22.4626 14.8728 16.313

CAGE analysis