Hb_005743_010

Information

Type -
Description -
Location Contig5743: 11475-11837
Sequence    

Annotation

kegg
ID tcc:TCM_042352
description RING/U-box superfamily protein, putative
nr
ID XP_007008731.1
description RING/U-box superfamily protein, putative [Theobroma cacao]
swissprot
ID P0C035
description RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1
trembl
ID A0A061FKE5
description RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042352 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005743_010 0.0 - - RING/U-box superfamily protein, putative [Theobroma cacao]
2 Hb_003592_060 0.0770488159 - - hypothetical protein F383_11017 [Gossypium arboreum]
3 Hb_006266_010 0.0798816568 - - unnamed protein product [Vitis vinifera]
4 Hb_068804_070 0.0831768006 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
5 Hb_006615_220 0.0895330113 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
6 Hb_007643_060 0.0935901584 - - -
7 Hb_007951_020 0.1008893366 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
8 Hb_001284_070 0.1039811963 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012691_010 0.1083442779 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
10 Hb_004316_080 0.1094626574 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
11 Hb_000343_010 0.1112840263 - - F3F9.11 [Arabidopsis thaliana]
12 Hb_001310_060 0.1115959692 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_000035_150 0.1123096176 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
14 Hb_004607_020 0.1181656865 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
15 Hb_002217_060 0.1218321091 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
16 Hb_000471_030 0.1250065496 - - -
17 Hb_000205_180 0.1257692418 - - lipoxygenase, putative [Ricinus communis]
18 Hb_003626_020 0.1337554758 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
19 Hb_006294_030 0.1344350395 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_137272_010 0.140116725 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_005743_010 Hb_005743_010 Hb_003592_060 Hb_003592_060 Hb_005743_010--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_005743_010--Hb_006266_010 Hb_068804_070 Hb_068804_070 Hb_005743_010--Hb_068804_070 Hb_006615_220 Hb_006615_220 Hb_005743_010--Hb_006615_220 Hb_007643_060 Hb_007643_060 Hb_005743_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_005743_010--Hb_007951_020 Hb_003592_060--Hb_006266_010 Hb_003592_060--Hb_068804_070 Hb_009693_010 Hb_009693_010 Hb_003592_060--Hb_009693_010 Hb_002217_060 Hb_002217_060 Hb_003592_060--Hb_002217_060 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120 Hb_006266_010--Hb_009693_010 Hb_006266_010--Hb_006615_220 Hb_137272_010 Hb_137272_010 Hb_006266_010--Hb_137272_010 Hb_006266_010--Hb_068804_070 Hb_000471_030 Hb_000471_030 Hb_068804_070--Hb_000471_030 Hb_004316_080 Hb_004316_080 Hb_068804_070--Hb_004316_080 Hb_068804_070--Hb_002217_060 Hb_006615_220--Hb_007643_060 Hb_000035_150 Hb_000035_150 Hb_006615_220--Hb_000035_150 Hb_000343_010 Hb_000343_010 Hb_006615_220--Hb_000343_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_007643_060--Hb_000035_150 Hb_007643_060--Hb_007951_020 Hb_012691_010 Hb_012691_010 Hb_007643_060--Hb_012691_010 Hb_007643_060--Hb_000343_010 Hb_007951_020--Hb_000035_150 Hb_003626_020 Hb_003626_020 Hb_007951_020--Hb_003626_020 Hb_007951_020--Hb_012691_010 Hb_007951_020--Hb_000343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.730939 7.33418 1.7761 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.58411 1.61146

CAGE analysis