Hb_005743_050

Information

Type -
Description -
Location Contig5743: 30663-33753
Sequence    

Annotation

kegg
ID egr:104442848
description protein ECERIFERUM 1-like
nr
ID CDP09363.1
description unnamed protein product [Coffea canephora]
swissprot
ID F4HVY0
description Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1
trembl
ID A0A068UP14
description Coffea canephora DH200=94 genomic scaffold, scaffold_38 OS=Coffea canephora GN=GSCOC_T00028696001 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein eceriferum 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49616: 30294-34121 , PASA_asmbl_49617: 32666-34009
cDNA
(Sanger)
(ID:Location)		 010_B22.ab1: 32939-34009

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005743_050 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000139_170 0.0241488274 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
3 Hb_000987_030 0.027612739 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
4 Hb_001775_020 0.0333222866 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
5 Hb_001295_070 0.0337257462 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
6 Hb_158001_010 0.0385813311 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
7 Hb_000251_150 0.0398368305 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
8 Hb_000844_080 0.0435437442 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
9 Hb_001507_060 0.0503747367 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
10 Hb_001936_100 0.0515121189 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000703_340 0.0515824892 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
12 Hb_000179_010 0.0551346991 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
13 Hb_001049_130 0.0555284107 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
14 Hb_000979_120 0.0558907401 - - Pectinesterase-1 precursor, putative [Ricinus communis]
15 Hb_009707_020 0.0566766723 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
16 Hb_004452_070 0.0588928202 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
17 Hb_001053_070 0.0589741347 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
18 Hb_002328_080 0.0619061531 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_002014_150 0.0643419142 - - monooxygenase, putative [Ricinus communis]
20 Hb_031862_220 0.0654293407 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005743_050 Hb_005743_050 Hb_000139_170 Hb_000139_170 Hb_005743_050--Hb_000139_170 Hb_000987_030 Hb_000987_030 Hb_005743_050--Hb_000987_030 Hb_001775_020 Hb_001775_020 Hb_005743_050--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_005743_050--Hb_001295_070 Hb_158001_010 Hb_158001_010 Hb_005743_050--Hb_158001_010 Hb_000251_150 Hb_000251_150 Hb_005743_050--Hb_000251_150 Hb_000139_170--Hb_001775_020 Hb_000139_170--Hb_001295_070 Hb_000844_080 Hb_000844_080 Hb_000139_170--Hb_000844_080 Hb_009707_020 Hb_009707_020 Hb_000139_170--Hb_009707_020 Hb_001507_060 Hb_001507_060 Hb_000139_170--Hb_001507_060 Hb_000987_030--Hb_000251_150 Hb_000987_030--Hb_158001_010 Hb_001049_130 Hb_001049_130 Hb_000987_030--Hb_001049_130 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_031862_220 Hb_031862_220 Hb_000987_030--Hb_031862_220 Hb_001775_020--Hb_000844_080 Hb_001775_020--Hb_001295_070 Hb_001775_020--Hb_001507_060 Hb_001775_020--Hb_009707_020 Hb_001295_070--Hb_000844_080 Hb_001295_070--Hb_001507_060 Hb_002328_080 Hb_002328_080 Hb_001295_070--Hb_002328_080 Hb_085682_010 Hb_085682_010 Hb_158001_010--Hb_085682_010 Hb_158001_010--Hb_001295_070 Hb_000179_010 Hb_000179_010 Hb_158001_010--Hb_000179_010 Hb_158001_010--Hb_001507_060 Hb_000046_400 Hb_000046_400 Hb_000251_150--Hb_000046_400 Hb_029879_020 Hb_029879_020 Hb_000251_150--Hb_029879_020 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00922079 184.735 114.234 0 0.0435044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0397718 359.397

CAGE analysis