Hb_005754_010

Information

Type -
Description -
Location Contig5754: 34471-40982
Sequence    

Annotation

kegg
ID pop:POPTR_0017s042802
description hypothetical protein
nr
ID XP_006387706.1
description hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DUH2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0660s00210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49638: 37171-37407 , PASA_asmbl_49640: 39664-41176 , PASA_asmbl_49641: 40751-41215 , PASA_asmbl_49642: 39622-40000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005754_010 0.0 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
2 Hb_002309_010 0.0747581202 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
3 Hb_032278_020 0.1107917619 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
4 Hb_164544_010 0.1138187674 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
5 Hb_000120_430 0.1138759428 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
6 Hb_001454_380 0.1141550486 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
7 Hb_103760_010 0.1168455633 - - serine/arginine rich splicing factor, putative [Ricinus communis]
8 Hb_003464_080 0.1175543662 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
9 Hb_000844_070 0.119300599 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
10 Hb_001025_110 0.1197587787 - - conserved hypothetical protein [Ricinus communis]
11 Hb_034552_030 0.120844903 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
12 Hb_000331_060 0.1212341847 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
13 Hb_000648_100 0.1227378027 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
14 Hb_000089_120 0.1235440859 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000302_310 0.1235876955 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
16 Hb_000351_120 0.1247547762 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
17 Hb_001960_020 0.126212945 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
18 Hb_000011_360 0.1264281158 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
19 Hb_001433_070 0.1270510414 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
20 Hb_000020_150 0.1283189594 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]

Gene co-expression network

sample Hb_005754_010 Hb_005754_010 Hb_002309_010 Hb_002309_010 Hb_005754_010--Hb_002309_010 Hb_032278_020 Hb_032278_020 Hb_005754_010--Hb_032278_020 Hb_164544_010 Hb_164544_010 Hb_005754_010--Hb_164544_010 Hb_000120_430 Hb_000120_430 Hb_005754_010--Hb_000120_430 Hb_001454_380 Hb_001454_380 Hb_005754_010--Hb_001454_380 Hb_103760_010 Hb_103760_010 Hb_005754_010--Hb_103760_010 Hb_000351_120 Hb_000351_120 Hb_002309_010--Hb_000351_120 Hb_001433_070 Hb_001433_070 Hb_002309_010--Hb_001433_070 Hb_002309_010--Hb_000120_430 Hb_000270_630 Hb_000270_630 Hb_002309_010--Hb_000270_630 Hb_002309_010--Hb_032278_020 Hb_000059_140 Hb_000059_140 Hb_032278_020--Hb_000059_140 Hb_000648_100 Hb_000648_100 Hb_032278_020--Hb_000648_100 Hb_000923_080 Hb_000923_080 Hb_032278_020--Hb_000923_080 Hb_011930_080 Hb_011930_080 Hb_032278_020--Hb_011930_080 Hb_001102_080 Hb_001102_080 Hb_032278_020--Hb_001102_080 Hb_004209_020 Hb_004209_020 Hb_032278_020--Hb_004209_020 Hb_002784_020 Hb_002784_020 Hb_164544_010--Hb_002784_020 Hb_004235_080 Hb_004235_080 Hb_164544_010--Hb_004235_080 Hb_001089_110 Hb_001089_110 Hb_164544_010--Hb_001089_110 Hb_002652_030 Hb_002652_030 Hb_164544_010--Hb_002652_030 Hb_000089_120 Hb_000089_120 Hb_164544_010--Hb_000089_120 Hb_017862_020 Hb_017862_020 Hb_164544_010--Hb_017862_020 Hb_004631_180 Hb_004631_180 Hb_000120_430--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_000120_430--Hb_001051_080 Hb_000020_150 Hb_000020_150 Hb_000120_430--Hb_000020_150 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_033834_030 Hb_033834_030 Hb_000120_430--Hb_033834_030 Hb_116349_070 Hb_116349_070 Hb_000120_430--Hb_116349_070 Hb_002783_170 Hb_002783_170 Hb_001454_380--Hb_002783_170 Hb_001454_380--Hb_002309_010 Hb_000844_070 Hb_000844_070 Hb_001454_380--Hb_000844_070 Hb_000480_010 Hb_000480_010 Hb_001454_380--Hb_000480_010 Hb_019053_020 Hb_019053_020 Hb_001454_380--Hb_019053_020 Hb_000083_160 Hb_000083_160 Hb_103760_010--Hb_000083_160 Hb_001488_410 Hb_001488_410 Hb_103760_010--Hb_001488_410 Hb_007026_040 Hb_007026_040 Hb_103760_010--Hb_007026_040 Hb_003010_020 Hb_003010_020 Hb_103760_010--Hb_003010_020 Hb_000208_210 Hb_000208_210 Hb_103760_010--Hb_000208_210 Hb_001617_060 Hb_001617_060 Hb_103760_010--Hb_001617_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.99324 0.446742 0.758076 0.71475 0.897218 1.27077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.377504 0.771666 0.319496 1.13274 0.236199

CAGE analysis