Hb_005754_020

Information

Type -
Description -
Location Contig5754: 42644-53897
Sequence    

Annotation

kegg
ID vvi:100242320
description mitogen-activated protein kinase homolog MMK1
nr
ID XP_012075394.1
description PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
swissprot
ID Q40532
description Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1
trembl
ID A0A067KG83
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_10676 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog mmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49643: 42674-53736 , PASA_asmbl_49644: 50692-50880
cDNA
(Sanger)
(ID:Location)		 043_J16.ab1: 47318-53736

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005754_020 0.0 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
2 Hb_002044_090 0.0564904752 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
3 Hb_000062_230 0.0568617617 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
4 Hb_002377_040 0.0597227058 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_000028_470 0.0609687667 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
6 Hb_003352_050 0.0692875368 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
7 Hb_000176_140 0.0745387882 - - PREDICTED: bystin [Jatropha curcas]
8 Hb_000085_340 0.078977068 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
9 Hb_001493_100 0.0791444279 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
10 Hb_000359_170 0.0812940942 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
11 Hb_002249_140 0.0841310295 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
12 Hb_000784_090 0.0860790975 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
13 Hb_127979_010 0.0868538537 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
14 Hb_000771_110 0.0921775071 - - protein phosphatase 2C [Hevea brasiliensis]
15 Hb_000714_020 0.0923022851 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
16 Hb_000179_250 0.0924837618 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
17 Hb_178968_150 0.0932109044 - - zinc finger protein, putative [Ricinus communis]
18 Hb_004813_010 0.0935877878 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_011316_030 0.0944000187 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
20 Hb_008725_250 0.0963196786 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005754_020 Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_005754_020--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_005754_020--Hb_000062_230 Hb_002377_040 Hb_002377_040 Hb_005754_020--Hb_002377_040 Hb_000028_470 Hb_000028_470 Hb_005754_020--Hb_000028_470 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_002044_090--Hb_000062_230 Hb_002044_090--Hb_002377_040 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_002044_090--Hb_003352_050 Hb_000062_230--Hb_002377_040 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_002377_040--Hb_003352_050 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340 Hb_178968_150 Hb_178968_150 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_127979_010 Hb_127979_010 Hb_000176_140--Hb_127979_010 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
259.382 38.8148 25.5866 31.7712 190.737 195.298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
157.62 81.0097 112.1 30.7848 14.7433

CAGE analysis