Hb_005754_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5754: 59197-62377
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00500g
description hypothetical protein
nr
ID KDP44703.1
description hypothetical protein JCGZ_01203 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005754_030 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
2 Hb_001050_050 0.1305584469 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]
3 Hb_002986_070 0.1395587708 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
4 Hb_007735_060 0.1861862631 - - PPase [Hevea brasiliensis]
5 Hb_002016_050 0.1864060556 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
6 Hb_015183_080 0.1874459871 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_007234_010 0.1876647263 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
8 Hb_007545_130 0.1897360236 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
9 Hb_013459_010 0.1925546197 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
10 Hb_003506_050 0.1995001085 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_005701_130 0.2009544952 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
12 Hb_001054_120 0.2013943141 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
13 Hb_005523_010 0.2024575028 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
14 Hb_007317_090 0.20459349 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
15 Hb_002986_060 0.2066426904 - - hypothetical protein M569_15879, partial [Genlisea aurea]
16 Hb_000367_020 0.2068773896 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
17 Hb_052128_010 0.2070410148 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
18 Hb_004162_190 0.2078330348 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
19 Hb_006569_050 0.2079755825 - - -
20 Hb_000369_080 0.2089056643 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_005754_030 Hb_005754_030 Hb_001050_050 Hb_001050_050 Hb_005754_030--Hb_001050_050 Hb_002986_070 Hb_002986_070 Hb_005754_030--Hb_002986_070 Hb_007735_060 Hb_007735_060 Hb_005754_030--Hb_007735_060 Hb_002016_050 Hb_002016_050 Hb_005754_030--Hb_002016_050 Hb_015183_080 Hb_015183_080 Hb_005754_030--Hb_015183_080 Hb_007234_010 Hb_007234_010 Hb_005754_030--Hb_007234_010 Hb_052128_010 Hb_052128_010 Hb_001050_050--Hb_052128_010 Hb_000022_190 Hb_000022_190 Hb_001050_050--Hb_000022_190 Hb_089246_010 Hb_089246_010 Hb_001050_050--Hb_089246_010 Hb_001050_050--Hb_002986_070 Hb_001396_240 Hb_001396_240 Hb_001050_050--Hb_001396_240 Hb_002986_070--Hb_002016_050 Hb_007545_130 Hb_007545_130 Hb_002986_070--Hb_007545_130 Hb_015778_060 Hb_015778_060 Hb_002986_070--Hb_015778_060 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_000186_080 Hb_000186_080 Hb_002986_070--Hb_000186_080 Hb_013459_010 Hb_013459_010 Hb_002986_070--Hb_013459_010 Hb_001801_020 Hb_001801_020 Hb_007735_060--Hb_001801_020 Hb_002817_060 Hb_002817_060 Hb_007735_060--Hb_002817_060 Hb_000367_020 Hb_000367_020 Hb_007735_060--Hb_000367_020 Hb_000484_010 Hb_000484_010 Hb_007735_060--Hb_000484_010 Hb_012053_090 Hb_012053_090 Hb_007735_060--Hb_012053_090 Hb_002235_200 Hb_002235_200 Hb_007735_060--Hb_002235_200 Hb_002016_050--Hb_000186_080 Hb_002016_050--Hb_015778_060 Hb_002016_050--Hb_007545_130 Hb_004785_070 Hb_004785_070 Hb_002016_050--Hb_004785_070 Hb_000997_140 Hb_000997_140 Hb_002016_050--Hb_000997_140 Hb_002521_020 Hb_002521_020 Hb_015183_080--Hb_002521_020 Hb_003014_030 Hb_003014_030 Hb_015183_080--Hb_003014_030 Hb_000445_130 Hb_000445_130 Hb_015183_080--Hb_000445_130 Hb_001054_120 Hb_001054_120 Hb_015183_080--Hb_001054_120 Hb_015183_080--Hb_000367_020 Hb_001124_050 Hb_001124_050 Hb_015183_080--Hb_001124_050 Hb_004204_010 Hb_004204_010 Hb_007234_010--Hb_004204_010 Hb_029243_020 Hb_029243_020 Hb_007234_010--Hb_029243_020 Hb_003047_020 Hb_003047_020 Hb_007234_010--Hb_003047_020 Hb_008053_040 Hb_008053_040 Hb_007234_010--Hb_008053_040 Hb_007234_010--Hb_015183_080 Hb_001488_180 Hb_001488_180 Hb_007234_010--Hb_001488_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217413 0.635806 0.288179 0.183481 0.0590228 0.566319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0459084 0.048168 0.276186 0.210216 0.847062

CAGE analysis