Hb_005754_050

Information

Type -
Description -
Location Contig5754: 81581-87173
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13230g
description hypothetical protein
nr
ID XP_012075399.1
description PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10678 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49649: 81643-87125 , PASA_asmbl_49650: 81556-82833 , PASA_asmbl_49651: 82269-82621 , PASA_asmbl_49652: 88129-91388
cDNA
(Sanger)
(ID:Location)		 050_H18.ab1: 81643-87125

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005754_050 0.0 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
2 Hb_001170_020 0.0464103345 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003050_380 0.0470643523 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
4 Hb_005888_020 0.0480890739 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
5 Hb_002304_030 0.0511125609 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
6 Hb_010288_070 0.0528128119 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
7 Hb_000977_250 0.0537271774 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_000297_190 0.0538829323 - - cell wall invertase [Manihot esculenta]
9 Hb_001717_060 0.0550100655 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
10 Hb_005280_020 0.0631705453 - - glycine cleavage system h protein, putative [Ricinus communis]
11 Hb_003032_080 0.0637758599 - - conserved hypothetical protein [Ricinus communis]
12 Hb_023313_050 0.0669372968 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
13 Hb_002434_040 0.0677650323 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
14 Hb_001710_010 0.0680442275 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
15 Hb_000053_010 0.0680757697 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
16 Hb_003605_170 0.0683848398 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
17 Hb_005610_070 0.0694563968 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_074312_010 0.0709511724 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
19 Hb_000625_080 0.073375342 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
20 Hb_003836_040 0.0760580197 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]

Gene co-expression network

sample Hb_005754_050 Hb_005754_050 Hb_001170_020 Hb_001170_020 Hb_005754_050--Hb_001170_020 Hb_003050_380 Hb_003050_380 Hb_005754_050--Hb_003050_380 Hb_005888_020 Hb_005888_020 Hb_005754_050--Hb_005888_020 Hb_002304_030 Hb_002304_030 Hb_005754_050--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_005754_050--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_005754_050--Hb_000977_250 Hb_001170_020--Hb_005888_020 Hb_001170_020--Hb_003050_380 Hb_000297_190 Hb_000297_190 Hb_001170_020--Hb_000297_190 Hb_001170_020--Hb_002304_030 Hb_001170_020--Hb_010288_070 Hb_001170_020--Hb_000977_250 Hb_003050_380--Hb_005888_020 Hb_003050_380--Hb_010288_070 Hb_003050_380--Hb_002304_030 Hb_003050_380--Hb_000297_190 Hb_003032_080 Hb_003032_080 Hb_003050_380--Hb_003032_080 Hb_005888_020--Hb_000297_190 Hb_005888_020--Hb_002304_030 Hb_005888_020--Hb_010288_070 Hb_005610_070 Hb_005610_070 Hb_005888_020--Hb_005610_070 Hb_002304_030--Hb_010288_070 Hb_002304_030--Hb_000297_190 Hb_002304_030--Hb_005610_070 Hb_010288_070--Hb_003032_080 Hb_010288_070--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_010288_070--Hb_074312_010 Hb_002434_040 Hb_002434_040 Hb_000977_250--Hb_002434_040 Hb_000053_010 Hb_000053_010 Hb_000977_250--Hb_000053_010 Hb_023313_050 Hb_023313_050 Hb_000977_250--Hb_023313_050 Hb_003605_170 Hb_003605_170 Hb_000977_250--Hb_003605_170 Hb_014361_160 Hb_014361_160 Hb_000977_250--Hb_014361_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156577 0.09924 43.6599 10.5839 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.125883 0.0581935 52.4188

CAGE analysis