Hb_005765_010

Information

Type -
Description -
Location Contig5765: 6571-9630
Sequence    

Annotation

kegg
ID rcu:RCOM_0804480
description ring finger protein, putative
nr
ID XP_012078618.1
description PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID B9RS95
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0804480 PE=4 SV=1
Gene Ontology
ID GO:0005886
description e3 ubiquitin-protein ligase at1g63170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49676: 6584-17790 , PASA_asmbl_49677: 6584-8529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005765_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
2 Hb_007062_030 0.0631187001 - - hypothetical protein VITISV_039033 [Vitis vinifera]
3 Hb_000083_120 0.0645165879 - - transcription factor, putative [Ricinus communis]
4 Hb_003363_080 0.0678421647 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
5 Hb_105328_020 0.0743694963 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
6 Hb_001500_140 0.0759664511 - - pelota, putative [Ricinus communis]
7 Hb_000981_030 0.0790287129 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
8 Hb_001434_080 0.0804200256 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
9 Hb_000170_090 0.0828631676 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
10 Hb_000083_160 0.084804036 - - Cell division cycle protein, putative [Ricinus communis]
11 Hb_001584_120 0.0857267395 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
12 Hb_000923_010 0.0857276706 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
13 Hb_001655_030 0.08586332 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
14 Hb_011016_050 0.0861150656 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
15 Hb_000830_030 0.0862023101 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
16 Hb_000261_240 0.0864255819 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
17 Hb_001946_340 0.0864604684 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
18 Hb_011231_020 0.0876425655 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
19 Hb_001635_160 0.0877573051 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
20 Hb_000156_010 0.0877935446 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005765_010 Hb_005765_010 Hb_007062_030 Hb_007062_030 Hb_005765_010--Hb_007062_030 Hb_000083_120 Hb_000083_120 Hb_005765_010--Hb_000083_120 Hb_003363_080 Hb_003363_080 Hb_005765_010--Hb_003363_080 Hb_105328_020 Hb_105328_020 Hb_005765_010--Hb_105328_020 Hb_001500_140 Hb_001500_140 Hb_005765_010--Hb_001500_140 Hb_000981_030 Hb_000981_030 Hb_005765_010--Hb_000981_030 Hb_002492_010 Hb_002492_010 Hb_007062_030--Hb_002492_010 Hb_007062_030--Hb_003363_080 Hb_001946_340 Hb_001946_340 Hb_007062_030--Hb_001946_340 Hb_012092_060 Hb_012092_060 Hb_007062_030--Hb_012092_060 Hb_000170_090 Hb_000170_090 Hb_007062_030--Hb_000170_090 Hb_000923_010 Hb_000923_010 Hb_000083_120--Hb_000923_010 Hb_000111_290 Hb_000111_290 Hb_000083_120--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000083_120--Hb_011016_050 Hb_004324_130 Hb_004324_130 Hb_000083_120--Hb_004324_130 Hb_000083_120--Hb_001500_140 Hb_003363_080--Hb_000170_090 Hb_001377_310 Hb_001377_310 Hb_003363_080--Hb_001377_310 Hb_003177_020 Hb_003177_020 Hb_003363_080--Hb_003177_020 Hb_003363_080--Hb_000981_030 Hb_105328_020--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_105328_020--Hb_000345_380 Hb_011037_030 Hb_011037_030 Hb_105328_020--Hb_011037_030 Hb_006588_170 Hb_006588_170 Hb_105328_020--Hb_006588_170 Hb_013399_020 Hb_013399_020 Hb_105328_020--Hb_013399_020 Hb_000156_010 Hb_000156_010 Hb_105328_020--Hb_000156_010 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_010142_020 Hb_010142_020 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_001999_310 Hb_001999_310 Hb_001500_140--Hb_001999_310 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450 Hb_000981_030--Hb_001500_140 Hb_179306_020 Hb_179306_020 Hb_000981_030--Hb_179306_020 Hb_001860_030 Hb_001860_030 Hb_000981_030--Hb_001860_030 Hb_006520_040 Hb_006520_040 Hb_000981_030--Hb_006520_040 Hb_005663_110 Hb_005663_110 Hb_000981_030--Hb_005663_110 Hb_000981_030--Hb_000170_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1901 13.0033 11.5045 16.9807 9.50073 19.9027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.62766 10.1185 11.4075 17.1223 10.1822

CAGE analysis