Hb_005765_050

Information

Type -
Description -
Location Contig5765: 29187-31243
Sequence    

Annotation

kegg
ID tcc:TCM_038304
description DNAJ heat shock family protein
nr
ID XP_011026528.1
description PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
swissprot
ID Q5R8J8
description DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1
trembl
ID A0A061GQC8
description DNAJ heat shock family protein OS=Theobroma cacao GN=TCM_038304 PE=4 SV=1
Gene Ontology
ID GO:0051082
description dnaj homolog subfamily b member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49686: 28951-31220 , PASA_asmbl_49687: 31260-31418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005765_050 0.0 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
2 Hb_000173_410 0.0614469542 - - PREDICTED: BI1-like protein [Jatropha curcas]
3 Hb_000608_050 0.0635108913 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
4 Hb_001300_150 0.0708873875 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
5 Hb_000454_090 0.0728982643 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
6 Hb_008841_020 0.0736793228 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
7 Hb_004078_040 0.0742087064 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
8 Hb_005054_210 0.0746716544 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
9 Hb_000920_200 0.077569441 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
10 Hb_004109_220 0.0779468613 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
11 Hb_001195_060 0.0784650086 - - Protein yrdA, putative [Ricinus communis]
12 Hb_001218_030 0.0786456544 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
13 Hb_000928_070 0.0796355797 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
14 Hb_001013_030 0.0799479922 - - GTP-binding protein yptv3, putative [Ricinus communis]
15 Hb_148121_040 0.0817444855 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_000200_020 0.08315847 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
17 Hb_006326_040 0.083926447 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000252_100 0.0843268632 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
19 Hb_000220_100 0.0843966771 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
20 Hb_000393_020 0.085863886 - - lipid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005765_050 Hb_005765_050 Hb_000173_410 Hb_000173_410 Hb_005765_050--Hb_000173_410 Hb_000608_050 Hb_000608_050 Hb_005765_050--Hb_000608_050 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_000454_090 Hb_000454_090 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_004078_040 Hb_004078_040 Hb_005765_050--Hb_004078_040 Hb_000173_410--Hb_000454_090 Hb_000252_100 Hb_000252_100 Hb_000173_410--Hb_000252_100 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_000173_410--Hb_004078_040 Hb_000608_050--Hb_000220_100 Hb_148121_040 Hb_148121_040 Hb_000608_050--Hb_148121_040 Hb_000086_140 Hb_000086_140 Hb_000608_050--Hb_000086_140 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_000608_050--Hb_004078_040 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030 Hb_000454_090--Hb_000252_100 Hb_000454_090--Hb_004078_040 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_001189_070 Hb_001189_070 Hb_008841_020--Hb_001189_070 Hb_001828_150 Hb_001828_150 Hb_008841_020--Hb_001828_150 Hb_008841_020--Hb_000599_250 Hb_000200_020 Hb_000200_020 Hb_008841_020--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_008841_020--Hb_006478_020 Hb_001489_080 Hb_001489_080 Hb_008841_020--Hb_001489_080 Hb_004078_040--Hb_000359_060 Hb_004078_040--Hb_000393_020 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.21564 6.49063 13.5762 18.2979 5.6266 8.28268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8314 17.1858 19.2132 11.0446 10.247

CAGE analysis