Hb_005766_010

Information

Type -
Description -
Location Contig5766: 56705-60037
Sequence    

Annotation

kegg
ID rcu:RCOM_1633620
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002517289.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID B9RU70
description Carboxypeptidase OS=Ricinus communis GN=RCOM_1633620 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49688: 56551-60041
cDNA
(Sanger)
(ID:Location)		 024_C11.ab1: 56551-57945 , 025_A01.ab1: 56708-58534 , 035_F10.ab1: 56551-58385

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005766_010 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_000594_160 0.0499738377 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
3 Hb_014250_010 0.0859476792 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
4 Hb_000866_190 0.0899967057 - - transcription factor, putative [Ricinus communis]
5 Hb_000096_210 0.0973967963 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
6 Hb_000017_320 0.0992463536 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
7 Hb_005731_070 0.0996841687 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007386_030 0.1015994503 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
9 Hb_015001_030 0.1044703163 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
10 Hb_021346_020 0.1051349202 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
11 Hb_009554_030 0.1089104721 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
12 Hb_001040_200 0.1098032148 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
13 Hb_003656_090 0.1105430365 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
14 Hb_001349_020 0.1109169751 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
15 Hb_001157_190 0.1118231018 - - PREDICTED: protein YLS3 [Jatropha curcas]
16 Hb_059000_010 0.1145848192 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
17 Hb_001141_160 0.1166258745 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
18 Hb_000616_010 0.1172792337 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001638_150 0.1174490167 - - acyltransferase, putative [Ricinus communis]
20 Hb_004079_100 0.1179274648 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]

Gene co-expression network

sample Hb_005766_010 Hb_005766_010 Hb_000594_160 Hb_000594_160 Hb_005766_010--Hb_000594_160 Hb_014250_010 Hb_014250_010 Hb_005766_010--Hb_014250_010 Hb_000866_190 Hb_000866_190 Hb_005766_010--Hb_000866_190 Hb_000096_210 Hb_000096_210 Hb_005766_010--Hb_000096_210 Hb_000017_320 Hb_000017_320 Hb_005766_010--Hb_000017_320 Hb_005731_070 Hb_005731_070 Hb_005766_010--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_000594_160--Hb_007386_030 Hb_001040_200 Hb_001040_200 Hb_000594_160--Hb_001040_200 Hb_000594_160--Hb_005731_070 Hb_004079_100 Hb_004079_100 Hb_000594_160--Hb_004079_100 Hb_000594_160--Hb_000866_190 Hb_014250_010--Hb_000096_210 Hb_009554_030 Hb_009554_030 Hb_014250_010--Hb_009554_030 Hb_015001_030 Hb_015001_030 Hb_014250_010--Hb_015001_030 Hb_014250_010--Hb_000866_190 Hb_001638_150 Hb_001638_150 Hb_014250_010--Hb_001638_150 Hb_000866_190--Hb_009554_030 Hb_006469_090 Hb_006469_090 Hb_000866_190--Hb_006469_090 Hb_015306_010 Hb_015306_010 Hb_000866_190--Hb_015306_010 Hb_001135_010 Hb_001135_010 Hb_000866_190--Hb_001135_010 Hb_000946_050 Hb_000946_050 Hb_000096_210--Hb_000946_050 Hb_000096_210--Hb_009554_030 Hb_039022_020 Hb_039022_020 Hb_000096_210--Hb_039022_020 Hb_004122_060 Hb_004122_060 Hb_000096_210--Hb_004122_060 Hb_002003_010 Hb_002003_010 Hb_000017_320--Hb_002003_010 Hb_001349_020 Hb_001349_020 Hb_000017_320--Hb_001349_020 Hb_002304_190 Hb_002304_190 Hb_000017_320--Hb_002304_190 Hb_005730_070 Hb_005730_070 Hb_000017_320--Hb_005730_070 Hb_002685_100 Hb_002685_100 Hb_000017_320--Hb_002685_100 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_000714_060 Hb_000714_060 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0931233 4.50531 10.3077 10.9645 0.0889487 0.0796204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0302988 0 0.0896597 12.7074 6.29028

CAGE analysis