Hb_005772_020

Information

Type -
Description -
Location Contig5772: 15522-17143
Sequence    

Annotation

kegg
ID pmum:103327218
description uncharacterized LOC103327218
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005772_020 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_005240_010 0.0684267574 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
3 Hb_000032_590 0.0858233862 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
4 Hb_006358_030 0.1092650494 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_010175_050 0.1110887653 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
6 Hb_171900_110 0.1212990112 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
7 Hb_000230_250 0.123397187 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
8 Hb_002030_100 0.1451803019 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
9 Hb_004007_210 0.1462946502 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
10 Hb_004880_120 0.1493291406 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
11 Hb_036492_020 0.1523846269 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_019026_040 0.152863231 - - S-locus lectin protein kinase family protein [Theobroma cacao]
13 Hb_003929_040 0.154134778 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
14 Hb_152414_010 0.1638129753 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
15 Hb_004126_050 0.1697010184 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
16 Hb_006243_010 0.1709778398 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
17 Hb_000112_040 0.1733307857 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_008341_010 0.1745946066 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
19 Hb_002211_020 0.1753158573 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
20 Hb_003811_030 0.1758141621 - - hypothetical protein JCGZ_01307 [Jatropha curcas]

Gene co-expression network

sample Hb_005772_020 Hb_005772_020 Hb_005240_010 Hb_005240_010 Hb_005772_020--Hb_005240_010 Hb_000032_590 Hb_000032_590 Hb_005772_020--Hb_000032_590 Hb_006358_030 Hb_006358_030 Hb_005772_020--Hb_006358_030 Hb_010175_050 Hb_010175_050 Hb_005772_020--Hb_010175_050 Hb_171900_110 Hb_171900_110 Hb_005772_020--Hb_171900_110 Hb_000230_250 Hb_000230_250 Hb_005772_020--Hb_000230_250 Hb_005240_010--Hb_000032_590 Hb_005240_010--Hb_171900_110 Hb_004126_050 Hb_004126_050 Hb_005240_010--Hb_004126_050 Hb_000780_160 Hb_000780_160 Hb_005240_010--Hb_000780_160 Hb_005240_010--Hb_006358_030 Hb_000032_590--Hb_171900_110 Hb_000032_590--Hb_006358_030 Hb_115114_010 Hb_115114_010 Hb_000032_590--Hb_115114_010 Hb_132259_010 Hb_132259_010 Hb_000032_590--Hb_132259_010 Hb_036492_020 Hb_036492_020 Hb_006358_030--Hb_036492_020 Hb_002030_100 Hb_002030_100 Hb_006358_030--Hb_002030_100 Hb_152414_010 Hb_152414_010 Hb_006358_030--Hb_152414_010 Hb_004879_030 Hb_004879_030 Hb_006358_030--Hb_004879_030 Hb_008341_010 Hb_008341_010 Hb_010175_050--Hb_008341_010 Hb_019026_040 Hb_019026_040 Hb_010175_050--Hb_019026_040 Hb_004241_170 Hb_004241_170 Hb_010175_050--Hb_004241_170 Hb_003811_030 Hb_003811_030 Hb_010175_050--Hb_003811_030 Hb_010175_050--Hb_000230_250 Hb_171900_110--Hb_000780_160 Hb_000112_040 Hb_000112_040 Hb_171900_110--Hb_000112_040 Hb_000039_120 Hb_000039_120 Hb_171900_110--Hb_000039_120 Hb_171900_110--Hb_004126_050 Hb_004880_120 Hb_004880_120 Hb_000230_250--Hb_004880_120 Hb_010180_050 Hb_010180_050 Hb_000230_250--Hb_010180_050 Hb_004007_210 Hb_004007_210 Hb_000230_250--Hb_004007_210 Hb_000230_250--Hb_000032_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0945478 0.0463386 0.0150946 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0724464

CAGE analysis