Hb_005772_030

Information

Type -
Description -
Location Contig5772: 55254-58758
Sequence    

Annotation

kegg
ID rcu:RCOM_0847860
description hypothetical protein
nr
ID XP_012089780.1
description PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
swissprot
ID Q8RXQ1
description Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=1
trembl
ID A0A067JG67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00419 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49706: 55351-58702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005772_030 0.0 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
2 Hb_000984_140 0.0792495911 - - PREDICTED: xylulose kinase [Jatropha curcas]
3 Hb_002809_160 0.09205085 - - PREDICTED: protein FAM63A [Jatropha curcas]
4 Hb_004204_210 0.096608429 - - PREDICTED: heparanase-like protein 1 [Jatropha curcas]
5 Hb_012353_040 0.0982665648 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_002025_270 0.1088503843 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
7 Hb_009078_020 0.109364045 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
8 Hb_001140_180 0.1118952676 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
9 Hb_004294_020 0.1119703093 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
10 Hb_103688_010 0.113219715 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
11 Hb_001484_090 0.1138559044 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_001414_010 0.114975358 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
13 Hb_002316_170 0.1154739544 - - purine permease, putative [Ricinus communis]
14 Hb_021977_010 0.1161310539 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
15 Hb_004875_010 0.1169854159 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
16 Hb_001408_020 0.1172855471 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
17 Hb_024758_020 0.1175724646 - - acyl-CoA binding protein 3B [Vernicia fordii]
18 Hb_029552_020 0.1198738038 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000562_100 0.1219644868 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
20 Hb_158845_060 0.1241655838 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005772_030 Hb_005772_030 Hb_000984_140 Hb_000984_140 Hb_005772_030--Hb_000984_140 Hb_002809_160 Hb_002809_160 Hb_005772_030--Hb_002809_160 Hb_004204_210 Hb_004204_210 Hb_005772_030--Hb_004204_210 Hb_012353_040 Hb_012353_040 Hb_005772_030--Hb_012353_040 Hb_002025_270 Hb_002025_270 Hb_005772_030--Hb_002025_270 Hb_009078_020 Hb_009078_020 Hb_005772_030--Hb_009078_020 Hb_021977_010 Hb_021977_010 Hb_000984_140--Hb_021977_010 Hb_001140_180 Hb_001140_180 Hb_000984_140--Hb_001140_180 Hb_005854_040 Hb_005854_040 Hb_000984_140--Hb_005854_040 Hb_000984_140--Hb_004204_210 Hb_001414_010 Hb_001414_010 Hb_000984_140--Hb_001414_010 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_003470_070 Hb_003470_070 Hb_004204_210--Hb_003470_070 Hb_004746_010 Hb_004746_010 Hb_004204_210--Hb_004746_010 Hb_004204_210--Hb_001140_180 Hb_005701_090 Hb_005701_090 Hb_004204_210--Hb_005701_090 Hb_000562_100 Hb_000562_100 Hb_012353_040--Hb_000562_100 Hb_000997_070 Hb_000997_070 Hb_012353_040--Hb_000997_070 Hb_003849_120 Hb_003849_120 Hb_012353_040--Hb_003849_120 Hb_012353_040--Hb_004204_210 Hb_000866_070 Hb_000866_070 Hb_012353_040--Hb_000866_070 Hb_005298_020 Hb_005298_020 Hb_002025_270--Hb_005298_020 Hb_001646_010 Hb_001646_010 Hb_002025_270--Hb_001646_010 Hb_024758_020 Hb_024758_020 Hb_002025_270--Hb_024758_020 Hb_002025_270--Hb_002809_160 Hb_003050_150 Hb_003050_150 Hb_002025_270--Hb_003050_150 Hb_001059_060 Hb_001059_060 Hb_009078_020--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27737 3.65381 4.18327 4.29292 2.38287 1.85202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.949057 0.298693 0.282856 3.64831 4.37332

CAGE analysis