Hb_005779_030

Information

Type -
Description -
Location Contig5779: 21636-27171
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012067823.1
description PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15753 PE=4 SV=1
Gene Ontology
ID GO:0005635
description nuclear pore complex protein nup62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_030 0.0 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
2 Hb_009646_010 0.1264761791 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
3 Hb_000059_300 0.1279232565 - - caspase, putative [Ricinus communis]
4 Hb_000110_300 0.1304656733 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
5 Hb_000465_260 0.1339193307 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
6 Hb_001818_060 0.1469990311 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
7 Hb_128589_010 0.1476400518 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
8 Hb_008468_030 0.150582738 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_000625_090 0.1539207609 - - conserved hypothetical protein [Ricinus communis]
10 Hb_028001_020 0.1563699703 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
11 Hb_111051_010 0.160484305 - - Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_003747_210 0.161818575 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
13 Hb_001341_200 0.1640482374 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
14 Hb_000120_230 0.1647515952 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
15 Hb_012317_020 0.1678874806 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_001486_200 0.1680577423 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
17 Hb_000863_030 0.1680616506 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
18 Hb_000084_220 0.1686507795 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
19 Hb_002151_100 0.1714408795 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
20 Hb_001054_090 0.1733388392 - - Potassium channel SKOR, putative [Ricinus communis]

Gene co-expression network

sample Hb_005779_030 Hb_005779_030 Hb_009646_010 Hb_009646_010 Hb_005779_030--Hb_009646_010 Hb_000059_300 Hb_000059_300 Hb_005779_030--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_005779_030--Hb_000110_300 Hb_000465_260 Hb_000465_260 Hb_005779_030--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_005779_030--Hb_001818_060 Hb_128589_010 Hb_128589_010 Hb_005779_030--Hb_128589_010 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_009646_010--Hb_128589_010 Hb_001486_200 Hb_001486_200 Hb_000059_300--Hb_001486_200 Hb_000056_350 Hb_000056_350 Hb_000059_300--Hb_000056_350 Hb_000059_300--Hb_009646_010 Hb_000059_300--Hb_001341_200 Hb_000181_210 Hb_000181_210 Hb_000059_300--Hb_000181_210 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_001956_060 Hb_001956_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_000465_260--Hb_000056_280 Hb_004631_110 Hb_004631_110 Hb_000465_260--Hb_004631_110 Hb_000465_260--Hb_001818_060 Hb_000025_400 Hb_000025_400 Hb_000465_260--Hb_000025_400 Hb_033363_010 Hb_033363_010 Hb_000465_260--Hb_033363_010 Hb_000200_170 Hb_000200_170 Hb_001818_060--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_001818_060--Hb_002849_070 Hb_001818_060--Hb_004631_110 Hb_001195_350 Hb_001195_350 Hb_001818_060--Hb_001195_350 Hb_000676_040 Hb_000676_040 Hb_001818_060--Hb_000676_040 Hb_128589_010--Hb_001956_060 Hb_128589_010--Hb_000110_300 Hb_000205_250 Hb_000205_250 Hb_128589_010--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_128589_010--Hb_000345_320 Hb_000625_090 Hb_000625_090 Hb_128589_010--Hb_000625_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150917 0.701198 0.198494 0.78459 0.0214741 0.0667492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237459 0.213549 0.127318 0.540461 0.170364

CAGE analysis