Hb_005779_060

Information

Type -
Description -
Location Contig5779: 31849-38605
Sequence    

Annotation

kegg
ID rcu:RCOM_1609300
description hypothetical protein
nr
ID XP_012083686.1
description PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14615 PE=4 SV=1
Gene Ontology
ID GO:0016788
description lipase-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49716: 32071-38513 , PASA_asmbl_49717: 35587-35773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_060 0.0 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
2 Hb_000876_070 0.0386777911 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_000016_250 0.0427612588 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
4 Hb_002046_180 0.0455692288 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
5 Hb_002739_100 0.0506915113 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_000062_220 0.053253341 - - BnaC02g35870D [Brassica napus]
7 Hb_002110_150 0.053369165 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
8 Hb_000684_470 0.0550627464 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
9 Hb_058999_020 0.055785403 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
10 Hb_000563_320 0.0560918026 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
11 Hb_000504_140 0.0575405367 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
12 Hb_001242_060 0.0590439618 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
13 Hb_007691_030 0.0599345132 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
14 Hb_000373_070 0.0606866382 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
15 Hb_001157_040 0.0625662585 - - casein kinase, putative [Ricinus communis]
16 Hb_012019_010 0.0630278897 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
17 Hb_032202_190 0.0637328008 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
18 Hb_000757_060 0.0643696868 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
19 Hb_000331_550 0.0646179532 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
20 Hb_005846_040 0.0665353131 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]

Gene co-expression network

sample Hb_005779_060 Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_000876_070--Hb_002739_100 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000563_320 Hb_000563_320 Hb_000016_250--Hb_000563_320 Hb_001157_040 Hb_001157_040 Hb_000016_250--Hb_001157_040 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_001242_060 Hb_001242_060 Hb_000016_250--Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_000016_250--Hb_031527_040 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_002110_150 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002046_180--Hb_005463_100 Hb_002739_100--Hb_007691_030 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_002739_100--Hb_031527_040 Hb_000062_220--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_000062_220--Hb_007416_320 Hb_000062_220--Hb_012019_010 Hb_010422_060 Hb_010422_060 Hb_000062_220--Hb_010422_060 Hb_000062_220--Hb_008725_260 Hb_002110_150--Hb_008725_260 Hb_002110_150--Hb_005463_100 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0343 11.7211 10.2713 9.78177 14.4257 14.2278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.139 21.2342 20.2253 11.3637 10.2025

CAGE analysis