Hb_005779_080

Information

Type -
Description -
Location Contig5779: 52666-67540
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05510g
description hypothetical protein
nr
ID XP_012083683.1
description PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
swissprot
ID Q8RXD6
description E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1
trembl
ID A0A067K1D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14614 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase bre1-like 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49718: 52774-53099 , PASA_asmbl_49720: 58480-67741 , PASA_asmbl_49721: 58480-67741 , PASA_asmbl_49722: 62060-62437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_080 0.0 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
2 Hb_005489_020 0.0499096454 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000029_050 0.062591709 - - expressed protein, putative [Ricinus communis]
4 Hb_000291_050 0.0644254251 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
5 Hb_001123_260 0.0652891961 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_001227_030 0.0653114907 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
7 Hb_005993_050 0.0668236334 - - Protein AFR, putative [Ricinus communis]
8 Hb_008406_200 0.0673674179 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
9 Hb_000343_250 0.0687384205 - - PREDICTED: protein CASC3 [Jatropha curcas]
10 Hb_023386_020 0.0694564094 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
11 Hb_001409_020 0.0698529846 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
12 Hb_021443_040 0.0717594079 - - acc synthase, putative [Ricinus communis]
13 Hb_167498_010 0.0735989121 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_033720_010 0.0747666994 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
15 Hb_000395_130 0.0747920273 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
16 Hb_000165_250 0.0751674024 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
17 Hb_001369_730 0.075271836 - - F5O11.10, putative isoform 1 [Theobroma cacao]
18 Hb_007943_110 0.0753161829 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
19 Hb_000092_020 0.0756269202 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
20 Hb_138596_010 0.0766473462 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]

Gene co-expression network

sample Hb_005779_080 Hb_005779_080 Hb_005489_020 Hb_005489_020 Hb_005779_080--Hb_005489_020 Hb_000029_050 Hb_000029_050 Hb_005779_080--Hb_000029_050 Hb_000291_050 Hb_000291_050 Hb_005779_080--Hb_000291_050 Hb_001123_260 Hb_001123_260 Hb_005779_080--Hb_001123_260 Hb_001227_030 Hb_001227_030 Hb_005779_080--Hb_001227_030 Hb_005993_050 Hb_005993_050 Hb_005779_080--Hb_005993_050 Hb_000329_370 Hb_000329_370 Hb_005489_020--Hb_000329_370 Hb_005489_020--Hb_001227_030 Hb_021443_040 Hb_021443_040 Hb_005489_020--Hb_021443_040 Hb_002890_290 Hb_002890_290 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_000165_250 Hb_000165_250 Hb_000029_050--Hb_000165_250 Hb_004221_020 Hb_004221_020 Hb_000029_050--Hb_004221_020 Hb_000029_050--Hb_005993_050 Hb_023386_020 Hb_023386_020 Hb_000029_050--Hb_023386_020 Hb_001409_020 Hb_001409_020 Hb_000029_050--Hb_001409_020 Hb_002725_120 Hb_002725_120 Hb_000291_050--Hb_002725_120 Hb_000291_050--Hb_000165_250 Hb_006649_050 Hb_006649_050 Hb_000291_050--Hb_006649_050 Hb_005496_130 Hb_005496_130 Hb_000291_050--Hb_005496_130 Hb_001004_060 Hb_001004_060 Hb_000291_050--Hb_001004_060 Hb_001123_260--Hb_005489_020 Hb_001123_260--Hb_021443_040 Hb_006816_430 Hb_006816_430 Hb_001123_260--Hb_006816_430 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_004097_070 Hb_004097_070 Hb_001123_260--Hb_004097_070 Hb_000025_410 Hb_000025_410 Hb_001227_030--Hb_000025_410 Hb_001227_030--Hb_002890_290 Hb_152175_010 Hb_152175_010 Hb_001227_030--Hb_152175_010 Hb_004837_180 Hb_004837_180 Hb_001227_030--Hb_004837_180 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_000853_230 Hb_000853_230 Hb_005993_050--Hb_000853_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6819 15.7434 9.15026 8.14678 13.2631 14.9944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8189 11.4381 10.7913 8.02793 13.3974

CAGE analysis