Hb_005779_090

Information

Type transcription factor
Description TF Family: ERF
Location Contig5779: 72984-73748
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05500g
description hypothetical protein
nr
ID XP_006375232.1
description hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
swissprot
ID Q8LBQ7
description Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2
trembl
ID A9PL79
description TINY-like protein OS=Populus trichocarpa GN=TINYL10 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf034

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49724: 72930-73282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_090 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
2 Hb_003944_010 0.1348182369 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
3 Hb_000359_160 0.1754475163 - - PREDICTED: protein CAJ1 [Jatropha curcas]
4 Hb_063718_010 0.1763003573 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007413_030 0.1777631972 - - kinase, putative [Ricinus communis]
6 Hb_013420_060 0.181969253 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
7 Hb_004117_320 0.1822201005 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
8 Hb_041813_090 0.1864014891 - - hypothetical protein EUGRSUZ_J01097 [Eucalyptus grandis]
9 Hb_172486_010 0.189106599 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_008226_010 0.1900361198 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
11 Hb_010174_100 0.1911037544 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
12 Hb_042463_010 0.1915159002 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
13 Hb_000439_020 0.1931658653 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
14 Hb_015234_010 0.1934959681 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
15 Hb_004979_050 0.1947014609 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
16 Hb_000084_140 0.195094968 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
17 Hb_002814_010 0.1953315748 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
18 Hb_002783_030 0.1970095703 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
19 Hb_000134_080 0.1974476018 - - synaptotagmin, putative [Ricinus communis]
20 Hb_169948_010 0.1979992161 - - hypothetical protein VITISV_006524 [Vitis vinifera]

Gene co-expression network

sample Hb_005779_090 Hb_005779_090 Hb_003944_010 Hb_003944_010 Hb_005779_090--Hb_003944_010 Hb_000359_160 Hb_000359_160 Hb_005779_090--Hb_000359_160 Hb_063718_010 Hb_063718_010 Hb_005779_090--Hb_063718_010 Hb_007413_030 Hb_007413_030 Hb_005779_090--Hb_007413_030 Hb_013420_060 Hb_013420_060 Hb_005779_090--Hb_013420_060 Hb_004117_320 Hb_004117_320 Hb_005779_090--Hb_004117_320 Hb_156850_020 Hb_156850_020 Hb_003944_010--Hb_156850_020 Hb_007595_020 Hb_007595_020 Hb_003944_010--Hb_007595_020 Hb_010080_070 Hb_010080_070 Hb_003944_010--Hb_010080_070 Hb_007201_010 Hb_007201_010 Hb_003944_010--Hb_007201_010 Hb_185274_010 Hb_185274_010 Hb_003944_010--Hb_185274_010 Hb_004979_050 Hb_004979_050 Hb_000359_160--Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_000359_160--Hb_000679_320 Hb_009393_140 Hb_009393_140 Hb_000359_160--Hb_009393_140 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010 Hb_063718_010--Hb_004979_050 Hb_000227_100 Hb_000227_100 Hb_063718_010--Hb_000227_100 Hb_063718_010--Hb_007595_020 Hb_063718_010--Hb_003944_010 Hb_007595_050 Hb_007595_050 Hb_063718_010--Hb_007595_050 Hb_005228_060 Hb_005228_060 Hb_063718_010--Hb_005228_060 Hb_007413_030--Hb_063718_010 Hb_002835_090 Hb_002835_090 Hb_007413_030--Hb_002835_090 Hb_003333_040 Hb_003333_040 Hb_007413_030--Hb_003333_040 Hb_010068_090 Hb_010068_090 Hb_007413_030--Hb_010068_090 Hb_000439_020 Hb_000439_020 Hb_007413_030--Hb_000439_020 Hb_000574_330 Hb_000574_330 Hb_013420_060--Hb_000574_330 Hb_004712_200 Hb_004712_200 Hb_013420_060--Hb_004712_200 Hb_013420_060--Hb_003333_040 Hb_032733_020 Hb_032733_020 Hb_013420_060--Hb_032733_020 Hb_011900_020 Hb_011900_020 Hb_013420_060--Hb_011900_020 Hb_000029_380 Hb_000029_380 Hb_013420_060--Hb_000029_380 Hb_010402_040 Hb_010402_040 Hb_004117_320--Hb_010402_040 Hb_005867_050 Hb_005867_050 Hb_004117_320--Hb_005867_050 Hb_002226_090 Hb_002226_090 Hb_004117_320--Hb_002226_090 Hb_022693_080 Hb_022693_080 Hb_004117_320--Hb_022693_080 Hb_004979_080 Hb_004979_080 Hb_004117_320--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_004117_320--Hb_004291_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.584933 1.42452 1.08216 2.09466 0.0291795 0.247769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.286582 0 0.101464 0.114187 8.77932

CAGE analysis