Hb_005779_100

Information

Type -
Description -
Location Contig5779: 77860-82914
Sequence    

Annotation

kegg
ID tcc:TCM_005640
description DNAJ
nr
ID XP_007052233.1
description DNAJ [Theobroma cacao]
swissprot
ID Q04960
description DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1
trembl
ID A0A061DUH3
description DNAJ OS=Theobroma cacao GN=TCM_005640 PE=3 SV=1
Gene Ontology
ID GO:0005524
description dnaj protein homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49725: 77981-82768 , PASA_asmbl_49726: 77981-82740 , PASA_asmbl_49727: 77981-79992
cDNA
(Sanger)
(ID:Location)		 008_D12.ab1: 79586-82740 , 028_P19.ab1: 78481-80139 , 038_O03.ab1: 79446-82740 , 038_O04.ab1: 79419-82712 , 039_L04.ab1: 78667-80924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_100 0.0 - - DNAJ [Theobroma cacao]
2 Hb_002154_050 0.0788693191 - - RNA binding protein, putative [Ricinus communis]
3 Hb_006602_020 0.0853440038 - - unknown [Medicago truncatula]
4 Hb_006602_010 0.0854658564 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
5 Hb_001396_230 0.0855659803 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
6 Hb_002357_040 0.0881609677 - - latex-abundant protein [Hevea brasiliensis]
7 Hb_001473_130 0.0884608765 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
8 Hb_001606_070 0.0943863434 - - fimbrin, putative [Ricinus communis]
9 Hb_000387_080 0.0946767722 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
10 Hb_000805_090 0.1019927623 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
11 Hb_024952_010 0.1046289813 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
12 Hb_001366_220 0.1075925775 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002025_320 0.1082473783 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
14 Hb_003057_120 0.1086607428 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_000983_100 0.111017666 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
16 Hb_000152_140 0.1113457222 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
17 Hb_000700_090 0.1120841038 - - protein with unknown function [Ricinus communis]
18 Hb_006787_040 0.1127097295 - - polyadenylate-binding protein, putative [Ricinus communis]
19 Hb_001981_090 0.1127982747 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
20 Hb_001396_220 0.1176408432 - - nuclear transport factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005779_100 Hb_005779_100 Hb_002154_050 Hb_002154_050 Hb_005779_100--Hb_002154_050 Hb_006602_020 Hb_006602_020 Hb_005779_100--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_005779_100--Hb_006602_010 Hb_001396_230 Hb_001396_230 Hb_005779_100--Hb_001396_230 Hb_002357_040 Hb_002357_040 Hb_005779_100--Hb_002357_040 Hb_001473_130 Hb_001473_130 Hb_005779_100--Hb_001473_130 Hb_005539_290 Hb_005539_290 Hb_002154_050--Hb_005539_290 Hb_002154_050--Hb_006602_010 Hb_002154_050--Hb_006602_020 Hb_002154_050--Hb_001473_130 Hb_000479_330 Hb_000479_330 Hb_002154_050--Hb_000479_330 Hb_000700_090 Hb_000700_090 Hb_006602_020--Hb_000700_090 Hb_006602_020--Hb_006602_010 Hb_006602_020--Hb_005539_290 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_001902_050 Hb_001902_050 Hb_006602_020--Hb_001902_050 Hb_006602_010--Hb_000700_090 Hb_006602_010--Hb_005539_290 Hb_004735_010 Hb_004735_010 Hb_006602_010--Hb_004735_010 Hb_024952_010 Hb_024952_010 Hb_001396_230--Hb_024952_010 Hb_008085_040 Hb_008085_040 Hb_001396_230--Hb_008085_040 Hb_002739_110 Hb_002739_110 Hb_001396_230--Hb_002739_110 Hb_001606_070 Hb_001606_070 Hb_001396_230--Hb_001606_070 Hb_003030_080 Hb_003030_080 Hb_001396_230--Hb_003030_080 Hb_000025_480 Hb_000025_480 Hb_002357_040--Hb_000025_480 Hb_001981_090 Hb_001981_090 Hb_002357_040--Hb_001981_090 Hb_001366_220 Hb_001366_220 Hb_002357_040--Hb_001366_220 Hb_000805_090 Hb_000805_090 Hb_002357_040--Hb_000805_090 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_002357_040--Hb_000387_080 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_001473_130--Hb_002352_010 Hb_002326_030 Hb_002326_030 Hb_001473_130--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
693.005 114.611 40.2425 83.434 593.719 1201.97
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1055.98 604.505 1442.42 239.916 53.9685

CAGE analysis