Hb_005784_010

Information

Type -
Description -
Location Contig5784: 11099-14198
Sequence    

Annotation

kegg
ID rcu:RCOM_1460300
description ankyrin repeat-containing protein, putative
nr
ID XP_012086093.1
description PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9RU14
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1460300 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49730: 11632-12222 , PASA_asmbl_49731: 13411-14092 , PASA_asmbl_49732: 14552-14740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_010 0.0 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
2 Hb_000345_550 0.0799217715 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
3 Hb_001951_080 0.080804851 - - O-acetyltransferase, putative [Ricinus communis]
4 Hb_007904_280 0.0920278857 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
5 Hb_004223_060 0.092196567 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
6 Hb_001819_020 0.0923854734 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
7 Hb_009783_010 0.1067136611 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
8 Hb_001159_230 0.1070204098 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_012098_160 0.1081478185 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
10 Hb_012484_050 0.1096216973 - - PREDICTED: kinesin KP1 [Jatropha curcas]
11 Hb_001032_020 0.1112354149 - - ankyrin repeat protein [Bruguiera gymnorhiza]
12 Hb_000878_050 0.1121831527 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
13 Hb_003097_160 0.1143258519 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
14 Hb_009023_010 0.1154367635 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
15 Hb_001486_280 0.1155997376 - - hypothetical protein RCOM_1321910 [Ricinus communis]
16 Hb_002485_010 0.1156510754 - - PREDICTED: extensin [Jatropha curcas]
17 Hb_009785_030 0.1166180382 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
18 Hb_010407_130 0.1186769999 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
19 Hb_000003_280 0.1202255385 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000103_450 0.1218195769 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]

Gene co-expression network

sample Hb_005784_010 Hb_005784_010 Hb_000345_550 Hb_000345_550 Hb_005784_010--Hb_000345_550 Hb_001951_080 Hb_001951_080 Hb_005784_010--Hb_001951_080 Hb_007904_280 Hb_007904_280 Hb_005784_010--Hb_007904_280 Hb_004223_060 Hb_004223_060 Hb_005784_010--Hb_004223_060 Hb_001819_020 Hb_001819_020 Hb_005784_010--Hb_001819_020 Hb_009783_010 Hb_009783_010 Hb_005784_010--Hb_009783_010 Hb_009785_030 Hb_009785_030 Hb_000345_550--Hb_009785_030 Hb_000345_550--Hb_001951_080 Hb_000345_550--Hb_009783_010 Hb_009023_010 Hb_009023_010 Hb_000345_550--Hb_009023_010 Hb_000345_550--Hb_007904_280 Hb_012484_050 Hb_012484_050 Hb_001951_080--Hb_012484_050 Hb_001486_280 Hb_001486_280 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210 Hb_012132_050 Hb_012132_050 Hb_007904_280--Hb_012132_050 Hb_007904_280--Hb_009783_010 Hb_007904_280--Hb_004223_060 Hb_000878_050 Hb_000878_050 Hb_007904_280--Hb_000878_050 Hb_001136_160 Hb_001136_160 Hb_007904_280--Hb_001136_160 Hb_000012_350 Hb_000012_350 Hb_007904_280--Hb_000012_350 Hb_004223_060--Hb_000878_050 Hb_000077_280 Hb_000077_280 Hb_004223_060--Hb_000077_280 Hb_000003_370 Hb_000003_370 Hb_004223_060--Hb_000003_370 Hb_000103_450 Hb_000103_450 Hb_004223_060--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_004223_060--Hb_000392_110 Hb_001819_020--Hb_001951_080 Hb_001819_020--Hb_000345_550 Hb_001819_020--Hb_012484_050 Hb_001819_020--Hb_004223_060 Hb_001032_020 Hb_001032_020 Hb_001819_020--Hb_001032_020 Hb_001898_040 Hb_001898_040 Hb_009783_010--Hb_001898_040 Hb_009783_010--Hb_012132_050 Hb_001136_040 Hb_001136_040 Hb_009783_010--Hb_001136_040 Hb_009783_010--Hb_001136_160 Hb_007185_050 Hb_007185_050 Hb_009783_010--Hb_007185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0497296 0.435704 2.01869 4.3743 0.083675 0.17829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0339344 0 0.161945 2.29762

CAGE analysis