Hb_005784_020

Information

Type -
Description -
Location Contig5784: 15145-17865
Sequence    

Annotation

kegg
ID rcu:RCOM_1460090
description Protein MKS1, putative
nr
ID XP_002517232.1
description Protein MKS1, putative [Ricinus communis]
swissprot
ID Q8LGD5
description Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2
trembl
ID B9RU13
description Protein MKS1, putative OS=Ricinus communis GN=RCOM_1460090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49733: 17277-17642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_020 0.0 - - Protein MKS1, putative [Ricinus communis]
2 Hb_008092_020 0.1028559025 - - transcription factor, putative [Ricinus communis]
3 Hb_002276_100 0.1030777253 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
4 Hb_000028_460 0.1074128515 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
5 Hb_000976_340 0.1074226064 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_004544_090 0.1079999303 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000497_100 0.1088517878 - - respiratory burst oxidase D [Manihot esculenta]
8 Hb_064047_010 0.1089291762 - - conserved hypothetical protein [Ricinus communis]
9 Hb_189034_010 0.11416713 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_002431_090 0.1192121776 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001248_170 0.1208714736 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_000111_190 0.1216044822 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
13 Hb_014361_020 0.1241430161 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
14 Hb_004166_020 0.1251624031 - - -
15 Hb_000137_030 0.1261269343 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
16 Hb_020285_010 0.1279673713 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
17 Hb_017604_020 0.1286209864 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
18 Hb_174101_010 0.1298273596 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_000589_330 0.1302049946 - - kinase, putative [Ricinus communis]
20 Hb_000847_050 0.1311334492 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005784_020 Hb_005784_020 Hb_008092_020 Hb_008092_020 Hb_005784_020--Hb_008092_020 Hb_002276_100 Hb_002276_100 Hb_005784_020--Hb_002276_100 Hb_000028_460 Hb_000028_460 Hb_005784_020--Hb_000028_460 Hb_000976_340 Hb_000976_340 Hb_005784_020--Hb_000976_340 Hb_004544_090 Hb_004544_090 Hb_005784_020--Hb_004544_090 Hb_000497_100 Hb_000497_100 Hb_005784_020--Hb_000497_100 Hb_003835_030 Hb_003835_030 Hb_008092_020--Hb_003835_030 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_001013_050 Hb_001013_050 Hb_008092_020--Hb_001013_050 Hb_008092_020--Hb_000028_460 Hb_002000_130 Hb_002000_130 Hb_008092_020--Hb_002000_130 Hb_000472_020 Hb_000472_020 Hb_008092_020--Hb_000472_020 Hb_074312_020 Hb_074312_020 Hb_002276_100--Hb_074312_020 Hb_020285_010 Hb_020285_010 Hb_002276_100--Hb_020285_010 Hb_000280_110 Hb_000280_110 Hb_002276_100--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_002276_100--Hb_046101_010 Hb_038777_010 Hb_038777_010 Hb_002276_100--Hb_038777_010 Hb_001369_070 Hb_001369_070 Hb_002276_100--Hb_001369_070 Hb_000028_460--Hb_000497_100 Hb_000028_460--Hb_038777_010 Hb_005357_020 Hb_005357_020 Hb_000028_460--Hb_005357_020 Hb_000028_460--Hb_002000_130 Hb_012743_020 Hb_012743_020 Hb_000028_460--Hb_012743_020 Hb_000116_290 Hb_000116_290 Hb_000976_340--Hb_000116_290 Hb_001248_170 Hb_001248_170 Hb_000976_340--Hb_001248_170 Hb_000094_010 Hb_000094_010 Hb_000976_340--Hb_000094_010 Hb_008040_060 Hb_008040_060 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_001123_170 Hb_001123_170 Hb_004544_090--Hb_001123_170 Hb_000411_050 Hb_000411_050 Hb_004544_090--Hb_000411_050 Hb_004544_090--Hb_002276_100 Hb_004544_090--Hb_020285_010 Hb_006002_010 Hb_006002_010 Hb_004544_090--Hb_006002_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_000497_100--Hb_020285_010 Hb_000497_100--Hb_001369_070 Hb_000497_100--Hb_007894_030 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0439821 9.51384 2.71804 7.12366 0.0206122 0.319865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.66665 2.83716

CAGE analysis