Hb_005784_110

Information

Type -
Description -
Location Contig5784: 149527-152828
Sequence    

Annotation

kegg
ID cit:102612860
description dolichol-phosphate mannosyltransferase-like
nr
ID XP_006473777.1
description PREDICTED: dolichol-phosphate mannosyltransferase-like isoform X1 [Citrus sinensis]
swissprot
ID O60762
description Dolichol-phosphate mannosyltransferase subunit 1 OS=Homo sapiens GN=DPM1 PE=1 SV=1
trembl
ID A0A067HBH9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026146mg PE=4 SV=1
Gene Ontology
ID GO:0005783
description dolichol-phosphate mannosyltransferase subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49753: 149399-151728
cDNA
(Sanger)
(ID:Location)		 042_C12.ab1: 149581-151520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_110 0.0 - - PREDICTED: dolichol-phosphate mannosyltransferase-like isoform X1 [Citrus sinensis]
2 Hb_009051_030 0.0756837109 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
3 Hb_002518_080 0.0905521267 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
4 Hb_000505_040 0.0923294675 - - -
5 Hb_004738_100 0.0933527175 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
6 Hb_003605_090 0.0949147847 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
7 Hb_003108_020 0.0958184071 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
8 Hb_001512_030 0.0969922694 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
9 Hb_000270_370 0.0973595638 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
10 Hb_003787_010 0.0975350231 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
11 Hb_001057_040 0.0977266274 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
12 Hb_000221_160 0.0997735345 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
13 Hb_001140_060 0.1003841792 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
14 Hb_000982_090 0.100645212 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
15 Hb_004102_110 0.1018077066 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
16 Hb_008092_040 0.1030641952 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
17 Hb_001633_050 0.1042178493 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
18 Hb_009773_020 0.1043797337 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
19 Hb_035398_020 0.1048336036 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_000905_060 0.1054420411 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_005784_110 Hb_005784_110 Hb_009051_030 Hb_009051_030 Hb_005784_110--Hb_009051_030 Hb_002518_080 Hb_002518_080 Hb_005784_110--Hb_002518_080 Hb_000505_040 Hb_000505_040 Hb_005784_110--Hb_000505_040 Hb_004738_100 Hb_004738_100 Hb_005784_110--Hb_004738_100 Hb_003605_090 Hb_003605_090 Hb_005784_110--Hb_003605_090 Hb_003108_020 Hb_003108_020 Hb_005784_110--Hb_003108_020 Hb_000102_020 Hb_000102_020 Hb_009051_030--Hb_000102_020 Hb_003787_010 Hb_003787_010 Hb_009051_030--Hb_003787_010 Hb_001057_040 Hb_001057_040 Hb_009051_030--Hb_001057_040 Hb_000656_170 Hb_000656_170 Hb_009051_030--Hb_000656_170 Hb_000574_480 Hb_000574_480 Hb_009051_030--Hb_000574_480 Hb_022425_040 Hb_022425_040 Hb_002518_080--Hb_022425_040 Hb_000127_180 Hb_000127_180 Hb_002518_080--Hb_000127_180 Hb_000217_030 Hb_000217_030 Hb_002518_080--Hb_000217_030 Hb_015279_010 Hb_015279_010 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_001504_110 Hb_001504_110 Hb_002518_080--Hb_001504_110 Hb_001512_030 Hb_001512_030 Hb_000505_040--Hb_001512_030 Hb_001633_050 Hb_001633_050 Hb_000505_040--Hb_001633_050 Hb_157022_010 Hb_157022_010 Hb_000505_040--Hb_157022_010 Hb_000236_040 Hb_000236_040 Hb_000505_040--Hb_000236_040 Hb_001484_070 Hb_001484_070 Hb_000505_040--Hb_001484_070 Hb_000270_370 Hb_000270_370 Hb_000505_040--Hb_000270_370 Hb_092337_010 Hb_092337_010 Hb_004738_100--Hb_092337_010 Hb_007416_320 Hb_007416_320 Hb_004738_100--Hb_007416_320 Hb_155159_020 Hb_155159_020 Hb_004738_100--Hb_155159_020 Hb_003092_040 Hb_003092_040 Hb_004738_100--Hb_003092_040 Hb_002631_060 Hb_002631_060 Hb_004738_100--Hb_002631_060 Hb_002105_040 Hb_002105_040 Hb_004738_100--Hb_002105_040 Hb_003697_040 Hb_003697_040 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_004934_100 Hb_004934_100 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_000479_190 Hb_000479_190 Hb_003108_020--Hb_000479_190 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.0753 15.9015 16.3569 35.3925 20.4171 30.6604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.8583 68.5011 42.1396 28.564 13.5295

CAGE analysis