Hb_005797_010

Information

Type -
Description -
Location Contig5797: 14490-19909
Sequence    

Annotation

kegg
ID vvi:100251254
description lysophospholipid acyltransferase 1
nr
ID XP_012087002.1
description PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
swissprot
ID F4IDU4
description Lysophospholipid acyltransferase 1 OS=Arabidopsis thaliana GN=LPLAT1 PE=1 SV=1
trembl
ID A0A067JNP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20663 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysophospholipid acyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49799: 14479-14842 , PASA_asmbl_49800: 15734-16021
cDNA
(Sanger)
(ID:Location)		 036_P09.ab1: 15431-18995 , 050_G17.ab1: 15431-16393

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005797_010 0.0 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
2 Hb_007481_010 0.0631102939 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
3 Hb_002728_080 0.0646486568 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000139_530 0.0666983111 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004102_170 0.0693731173 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
6 Hb_023313_030 0.0700477305 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_400 0.0712737771 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
8 Hb_003683_020 0.0747730815 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_000215_300 0.0761183086 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
10 Hb_000258_110 0.0778286646 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
11 Hb_000022_050 0.0799041168 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
12 Hb_003528_030 0.0800146633 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
13 Hb_000146_040 0.0816645153 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
14 Hb_001269_330 0.081711417 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
15 Hb_000352_300 0.0818365013 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
16 Hb_001405_210 0.0839251521 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
17 Hb_000163_090 0.0840738535 - - gamma-tubulin complex component, putative [Ricinus communis]
18 Hb_000345_160 0.0844705271 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
19 Hb_000261_230 0.0845091616 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
20 Hb_001014_210 0.0846048428 - - CYP51 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005797_010 Hb_005797_010 Hb_007481_010 Hb_007481_010 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_004102_170 Hb_004102_170 Hb_005797_010--Hb_004102_170 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_000009_400 Hb_000009_400 Hb_005797_010--Hb_000009_400 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_007481_010--Hb_000352_300 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_007481_010--Hb_000046_500 Hb_002989_020 Hb_002989_020 Hb_002728_080--Hb_002989_020 Hb_002728_080--Hb_007481_010 Hb_003683_020 Hb_003683_020 Hb_002728_080--Hb_003683_020 Hb_004990_010 Hb_004990_010 Hb_002728_080--Hb_004990_010 Hb_002728_080--Hb_000046_500 Hb_086639_080 Hb_086639_080 Hb_000139_530--Hb_086639_080 Hb_011214_160 Hb_011214_160 Hb_000139_530--Hb_011214_160 Hb_001087_030 Hb_001087_030 Hb_000139_530--Hb_001087_030 Hb_000139_530--Hb_000009_400 Hb_000139_530--Hb_004102_170 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_000049_020 Hb_000049_020 Hb_004102_170--Hb_000049_020 Hb_000146_040 Hb_000146_040 Hb_004102_170--Hb_000146_040 Hb_000345_160 Hb_000345_160 Hb_004102_170--Hb_000345_160 Hb_001405_210 Hb_001405_210 Hb_004102_170--Hb_001405_210 Hb_023313_030--Hb_002728_080 Hb_000215_300 Hb_000215_300 Hb_023313_030--Hb_000215_300 Hb_000313_220 Hb_000313_220 Hb_023313_030--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_023313_030--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_023313_030--Hb_002849_130 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.29894 8.15352 10.1003 19.3601 9.93412 10.214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3039 7.07507 6.82342 11.0106 7.84105

CAGE analysis