Hb_005797_030

Information

Type -
Description -
Location Contig5797: 43369-44946
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12140g
description POPTRDRAFT_415017; hypothetical protein
nr
ID XP_012087223.1
description PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
swissprot
ID Q9SIA3
description MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2
trembl
ID B9GW63
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0003s12140g PE=3 SV=2
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005797_030 0.0 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
2 Hb_001864_010 0.0741247706 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002007_230 0.0755070799 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
4 Hb_000920_360 0.082633595 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
5 Hb_001104_280 0.0829940402 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
6 Hb_003086_200 0.0874171135 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
7 Hb_000286_190 0.0903590096 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
8 Hb_005489_160 0.09180314 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
9 Hb_012395_070 0.0930318916 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
10 Hb_151364_010 0.105827018 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_000221_170 0.107786612 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
12 Hb_000265_010 0.1100500347 - - amino acid transporter, putative [Ricinus communis]
13 Hb_029508_030 0.1124905983 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
14 Hb_019229_020 0.120246303 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_002553_120 0.125940684 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
16 Hb_008503_020 0.1263566801 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_004574_010 0.1320499136 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
18 Hb_000300_570 0.1321545896 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
19 Hb_000608_450 0.1332407399 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
20 Hb_088916_010 0.1400772476 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]

Gene co-expression network

sample Hb_005797_030 Hb_005797_030 Hb_001864_010 Hb_001864_010 Hb_005797_030--Hb_001864_010 Hb_002007_230 Hb_002007_230 Hb_005797_030--Hb_002007_230 Hb_000920_360 Hb_000920_360 Hb_005797_030--Hb_000920_360 Hb_001104_280 Hb_001104_280 Hb_005797_030--Hb_001104_280 Hb_003086_200 Hb_003086_200 Hb_005797_030--Hb_003086_200 Hb_000286_190 Hb_000286_190 Hb_005797_030--Hb_000286_190 Hb_029508_030 Hb_029508_030 Hb_001864_010--Hb_029508_030 Hb_001864_010--Hb_002007_230 Hb_000221_170 Hb_000221_170 Hb_001864_010--Hb_000221_170 Hb_001864_010--Hb_000286_190 Hb_008503_020 Hb_008503_020 Hb_001864_010--Hb_008503_020 Hb_002007_230--Hb_003086_200 Hb_000300_570 Hb_000300_570 Hb_002007_230--Hb_000300_570 Hb_000265_010 Hb_000265_010 Hb_002007_230--Hb_000265_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_000920_360--Hb_000286_190 Hb_000920_360--Hb_029508_030 Hb_000608_450 Hb_000608_450 Hb_000920_360--Hb_000608_450 Hb_088916_010 Hb_088916_010 Hb_000920_360--Hb_088916_010 Hb_000920_360--Hb_001864_010 Hb_000000_060 Hb_000000_060 Hb_001104_280--Hb_000000_060 Hb_005489_160 Hb_005489_160 Hb_001104_280--Hb_005489_160 Hb_019229_020 Hb_019229_020 Hb_001104_280--Hb_019229_020 Hb_012395_070 Hb_012395_070 Hb_001104_280--Hb_012395_070 Hb_002007_140 Hb_002007_140 Hb_001104_280--Hb_002007_140 Hb_003086_200--Hb_000265_010 Hb_000043_080 Hb_000043_080 Hb_003086_200--Hb_000043_080 Hb_003086_200--Hb_000300_570 Hb_012053_030 Hb_012053_030 Hb_003086_200--Hb_012053_030 Hb_000286_190--Hb_029508_030 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_000286_190--Hb_000608_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.33658 0.0101515 0.0480054 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.508581 0.0485969

CAGE analysis