Hb_005800_040

Information

Type -
Description -
Location Contig5800: 36400-37099
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005800_040 0.0 - - -
2 Hb_001251_030 0.0191688343 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
3 Hb_013394_010 0.1019624416 - - PREDICTED: laccase-14-like [Malus domestica]
4 Hb_011344_080 0.1140911351 - - -
5 Hb_052761_010 0.1722383138 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
6 Hb_000739_090 0.2021678953 - - -
7 Hb_006156_020 0.2268408785 - - -
8 Hb_008071_030 0.2346177394 - - -
9 Hb_108854_010 0.2653568844 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
10 Hb_004466_010 0.2883120397 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_185326_010 0.2966814595 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000375_380 0.3028666956 - - -
13 Hb_011978_010 0.3028676689 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
14 Hb_000100_050 0.3028708834 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_004324_380 0.3028771857 - - -
16 Hb_027393_020 0.3031886824 - - -
17 Hb_007008_020 0.3039453226 - - -
18 Hb_046727_010 0.3061963863 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_080765_020 0.3066572287 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_000098_280 0.3090662119 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]

Gene co-expression network

sample Hb_005800_040 Hb_005800_040 Hb_001251_030 Hb_001251_030 Hb_005800_040--Hb_001251_030 Hb_013394_010 Hb_013394_010 Hb_005800_040--Hb_013394_010 Hb_011344_080 Hb_011344_080 Hb_005800_040--Hb_011344_080 Hb_052761_010 Hb_052761_010 Hb_005800_040--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_005800_040--Hb_000739_090 Hb_006156_020 Hb_006156_020 Hb_005800_040--Hb_006156_020 Hb_001251_030--Hb_013394_010 Hb_001251_030--Hb_011344_080 Hb_001251_030--Hb_052761_010 Hb_001251_030--Hb_000739_090 Hb_001251_030--Hb_006156_020 Hb_013394_010--Hb_011344_080 Hb_108854_010 Hb_108854_010 Hb_013394_010--Hb_108854_010 Hb_008071_030 Hb_008071_030 Hb_013394_010--Hb_008071_030 Hb_000594_170 Hb_000594_170 Hb_013394_010--Hb_000594_170 Hb_011344_080--Hb_108854_010 Hb_011344_080--Hb_000594_170 Hb_011344_080--Hb_008071_030 Hb_052761_010--Hb_000739_090 Hb_005867_010 Hb_005867_010 Hb_052761_010--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_052761_010--Hb_001364_020 Hb_000038_160 Hb_000038_160 Hb_052761_010--Hb_000038_160 Hb_000739_090--Hb_001364_020 Hb_000739_090--Hb_005867_010 Hb_000739_090--Hb_000038_160 Hb_006156_020--Hb_013394_010 Hb_006156_020--Hb_011344_080 Hb_006156_020--Hb_008071_030 Hb_004466_010 Hb_004466_010 Hb_006156_020--Hb_004466_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181706 0 0 0 0.171509 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0732668 0

CAGE analysis