Hb_005803_010

Information

Type -
Description -
Location Contig5803: 31292-34478
Sequence    

Annotation

kegg
ID tcc:TCM_007262
description Ethylene-dependent gravitropism-deficient and yellow-green-like 3
nr
ID XP_012093175.1
description PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9LMU1
description Probable zinc metallopeptidase EGY3, chloroplastic OS=Arabidopsis thaliana GN=EGY3 PE=2 SV=1
trembl
ID A0A061E1K2
description Ethylene-dependent gravitropism-deficient and yellow-green-like 3 OS=Theobroma cacao GN=TCM_007262 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49862: 31341-31465 , PASA_asmbl_49864: 33354-33904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005803_010 0.0 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_005846_020 0.0977049807 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
3 Hb_000345_530 0.0985704651 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
4 Hb_018790_070 0.101804583 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
5 Hb_000976_080 0.102384173 - - hypothetical protein VITISV_034376 [Vitis vinifera]
6 Hb_152453_010 0.1097315127 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
7 Hb_002249_160 0.1120901614 - - -
8 Hb_001001_020 0.1125029763 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
9 Hb_011612_010 0.1173167582 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_005322_030 0.1187754347 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
11 Hb_001754_240 0.119654967 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
12 Hb_001894_030 0.1196931092 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
13 Hb_004656_060 0.1204065976 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
14 Hb_000617_220 0.1212288836 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_000640_220 0.1221970639 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
16 Hb_004701_030 0.122392641 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
17 Hb_000480_010 0.1248352576 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002652_040 0.1250974846 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
19 Hb_125092_020 0.1266630419 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
20 Hb_001102_080 0.1271099761 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005803_010 Hb_005803_010 Hb_005846_020 Hb_005846_020 Hb_005803_010--Hb_005846_020 Hb_000345_530 Hb_000345_530 Hb_005803_010--Hb_000345_530 Hb_018790_070 Hb_018790_070 Hb_005803_010--Hb_018790_070 Hb_000976_080 Hb_000976_080 Hb_005803_010--Hb_000976_080 Hb_152453_010 Hb_152453_010 Hb_005803_010--Hb_152453_010 Hb_002249_160 Hb_002249_160 Hb_005803_010--Hb_002249_160 Hb_005846_020--Hb_152453_010 Hb_005846_020--Hb_000976_080 Hb_000617_220 Hb_000617_220 Hb_005846_020--Hb_000617_220 Hb_005695_060 Hb_005695_060 Hb_005846_020--Hb_005695_060 Hb_003091_010 Hb_003091_010 Hb_005846_020--Hb_003091_010 Hb_000923_040 Hb_000923_040 Hb_000345_530--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000345_530--Hb_000104_080 Hb_001040_040 Hb_001040_040 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_000345_530--Hb_002249_160 Hb_000345_530--Hb_000976_080 Hb_001102_080 Hb_001102_080 Hb_018790_070--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_018790_070--Hb_002942_050 Hb_000392_050 Hb_000392_050 Hb_018790_070--Hb_000392_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_000395_020 Hb_000395_020 Hb_018790_070--Hb_000395_020 Hb_000480_010 Hb_000480_010 Hb_018790_070--Hb_000480_010 Hb_000976_080--Hb_152453_010 Hb_001001_020 Hb_001001_020 Hb_000976_080--Hb_001001_020 Hb_000976_080--Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_000976_080--Hb_002783_120 Hb_001910_020 Hb_001910_020 Hb_152453_010--Hb_001910_020 Hb_152453_010--Hb_000345_530 Hb_152453_010--Hb_000617_220 Hb_152453_010--Hb_000392_050 Hb_011915_010 Hb_011915_010 Hb_002249_160--Hb_011915_010 Hb_002249_160--Hb_030827_030 Hb_001050_010 Hb_001050_010 Hb_002249_160--Hb_001050_010 Hb_005408_020 Hb_005408_020 Hb_002249_160--Hb_005408_020 Hb_003126_100 Hb_003126_100 Hb_002249_160--Hb_003126_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10838 2.03535 3.26722 1.49073 7.49733 5.60419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42421 1.89404 2.49885 2.77138 0.500717

CAGE analysis