Hb_005829_010

Information

Type -
Description -
Location Contig5829: 26722-29466
Sequence    

Annotation

kegg
ID pmum:103333617
description uncharacterized LOC103333617
nr
ID XP_012080804.1
description PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18184 PE=4 SV=1
Gene Ontology
ID GO:0016779
description plastid transcriptionally active7 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49879: 26722-29409
cDNA
(Sanger)
(ID:Location)		 009_J07.ab1: 26878-29417 , 015_N05.ab1: 29155-29409 , 021_I11.ab1: 26854-29409 , 021_N20.ab1: 26862-29409 , 025_A22.ab1: 26796-29409 , 027_B19.ab1: 26900-29409 , 029_P15.ab1: 29162-29406 , 038_B21.ab1: 26823-29409 , 044_O14.ab1: 26837-29409 , 052_P14.ab1: 27148-29314

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005829_010 0.0 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
2 Hb_000085_060 0.0869854567 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
3 Hb_003376_100 0.0965624512 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
4 Hb_001124_120 0.1006361166 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
5 Hb_134364_010 0.1013743325 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
6 Hb_000922_330 0.1044509162 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
7 Hb_008253_010 0.1054239324 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
8 Hb_000100_070 0.1093331538 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
9 Hb_001936_060 0.1095415303 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
10 Hb_076787_010 0.1107434527 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
11 Hb_002007_350 0.1114351139 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
12 Hb_108216_040 0.1116277767 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
13 Hb_002527_030 0.1129249051 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
14 Hb_001575_100 0.1131418295 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]
15 Hb_003058_040 0.1136022127 - - rotamase, putative [Ricinus communis]
16 Hb_014720_160 0.1136375443 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
17 Hb_001983_030 0.1137632729 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
18 Hb_000205_120 0.1140926711 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
19 Hb_001158_040 0.1150205459 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
20 Hb_003641_050 0.1167744928 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005829_010 Hb_005829_010 Hb_000085_060 Hb_000085_060 Hb_005829_010--Hb_000085_060 Hb_003376_100 Hb_003376_100 Hb_005829_010--Hb_003376_100 Hb_001124_120 Hb_001124_120 Hb_005829_010--Hb_001124_120 Hb_134364_010 Hb_134364_010 Hb_005829_010--Hb_134364_010 Hb_000922_330 Hb_000922_330 Hb_005829_010--Hb_000922_330 Hb_008253_010 Hb_008253_010 Hb_005829_010--Hb_008253_010 Hb_000085_060--Hb_001124_120 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_031939_010 Hb_031939_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000085_060--Hb_007218_080 Hb_000265_150 Hb_000265_150 Hb_003376_100--Hb_000265_150 Hb_003376_100--Hb_000085_060 Hb_002716_150 Hb_002716_150 Hb_003376_100--Hb_002716_150 Hb_000205_120 Hb_000205_120 Hb_003376_100--Hb_000205_120 Hb_003376_100--Hb_076787_010 Hb_150360_030 Hb_150360_030 Hb_001124_120--Hb_150360_030 Hb_002349_040 Hb_002349_040 Hb_001124_120--Hb_002349_040 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_001124_120--Hb_031939_010 Hb_001124_120--Hb_007218_080 Hb_134364_010--Hb_008253_010 Hb_001863_260 Hb_001863_260 Hb_134364_010--Hb_001863_260 Hb_000364_080 Hb_000364_080 Hb_134364_010--Hb_000364_080 Hb_009265_080 Hb_009265_080 Hb_134364_010--Hb_009265_080 Hb_010423_020 Hb_010423_020 Hb_134364_010--Hb_010423_020 Hb_002942_160 Hb_002942_160 Hb_134364_010--Hb_002942_160 Hb_003641_050 Hb_003641_050 Hb_000922_330--Hb_003641_050 Hb_014720_160 Hb_014720_160 Hb_000922_330--Hb_014720_160 Hb_000922_330--Hb_000085_060 Hb_000679_130 Hb_000679_130 Hb_000922_330--Hb_000679_130 Hb_005662_030 Hb_005662_030 Hb_000922_330--Hb_005662_030 Hb_002527_030 Hb_002527_030 Hb_000922_330--Hb_002527_030 Hb_008253_010--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_008253_010--Hb_002007_350 Hb_004678_060 Hb_004678_060 Hb_008253_010--Hb_004678_060 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_008253_010--Hb_007590_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
434.967 84.2804 114.152 80.5338 307.841 253.505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
297.306 161.544 124.495 80.6062 166.589

CAGE analysis