Hb_005833_020

Information

Type -
Description -
Location Contig5833: 55371-61311
Sequence    

Annotation

kegg
ID rcu:RCOM_0902830
description protein with unknown function (EC:2.7.11.25)
nr
ID XP_012091262.1
description PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067JA85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21152 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005833_020 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
2 Hb_007747_120 0.163241156 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008864_080 0.1709853887 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
4 Hb_000465_100 0.1884367985 - - catalytic, putative [Ricinus communis]
5 Hb_003375_080 0.1997695816 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
6 Hb_008253_040 0.2023890499 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
7 Hb_004007_210 0.2037237036 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
8 Hb_000856_410 0.2101658846 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_004924_030 0.210376097 - - -
10 Hb_004570_040 0.2109322598 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001004_010 0.2113792729 - - conserved hypothetical protein [Ricinus communis]
12 Hb_027402_100 0.2119599787 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
13 Hb_000243_310 0.2132549871 - - lactoylglutathione lyase, putative [Ricinus communis]
14 Hb_002687_150 0.2171325582 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_132840_090 0.2215252614 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
16 Hb_039650_030 0.2217381176 - - hypothetical protein RCOM_2128750 [Ricinus communis]
17 Hb_010589_130 0.2218515718 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
18 Hb_001345_030 0.224945159 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
19 Hb_000333_120 0.2256789485 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
20 Hb_005545_080 0.2282307667 - - hypothetical protein JCGZ_01293 [Jatropha curcas]

Gene co-expression network

sample Hb_005833_020 Hb_005833_020 Hb_007747_120 Hb_007747_120 Hb_005833_020--Hb_007747_120 Hb_008864_080 Hb_008864_080 Hb_005833_020--Hb_008864_080 Hb_000465_100 Hb_000465_100 Hb_005833_020--Hb_000465_100 Hb_003375_080 Hb_003375_080 Hb_005833_020--Hb_003375_080 Hb_008253_040 Hb_008253_040 Hb_005833_020--Hb_008253_040 Hb_004007_210 Hb_004007_210 Hb_005833_020--Hb_004007_210 Hb_007747_120--Hb_008864_080 Hb_000700_100 Hb_000700_100 Hb_007747_120--Hb_000700_100 Hb_001504_270 Hb_001504_270 Hb_007747_120--Hb_001504_270 Hb_007747_120--Hb_008253_040 Hb_000165_220 Hb_000165_220 Hb_007747_120--Hb_000165_220 Hb_008864_080--Hb_000165_220 Hb_001345_030 Hb_001345_030 Hb_008864_080--Hb_001345_030 Hb_077995_010 Hb_077995_010 Hb_008864_080--Hb_077995_010 Hb_009247_020 Hb_009247_020 Hb_008864_080--Hb_009247_020 Hb_000465_100--Hb_077995_010 Hb_001247_010 Hb_001247_010 Hb_000465_100--Hb_001247_010 Hb_006907_020 Hb_006907_020 Hb_000465_100--Hb_006907_020 Hb_004924_030 Hb_004924_030 Hb_000465_100--Hb_004924_030 Hb_000465_100--Hb_001345_030 Hb_000247_150 Hb_000247_150 Hb_000465_100--Hb_000247_150 Hb_185080_010 Hb_185080_010 Hb_003375_080--Hb_185080_010 Hb_001004_010 Hb_001004_010 Hb_003375_080--Hb_001004_010 Hb_010589_130 Hb_010589_130 Hb_003375_080--Hb_010589_130 Hb_078901_010 Hb_078901_010 Hb_003375_080--Hb_078901_010 Hb_000819_040 Hb_000819_040 Hb_003375_080--Hb_000819_040 Hb_009476_010 Hb_009476_010 Hb_003375_080--Hb_009476_010 Hb_000856_410 Hb_000856_410 Hb_008253_040--Hb_000856_410 Hb_004166_010 Hb_004166_010 Hb_008253_040--Hb_004166_010 Hb_000172_080 Hb_000172_080 Hb_008253_040--Hb_000172_080 Hb_004030_070 Hb_004030_070 Hb_008253_040--Hb_004030_070 Hb_001863_450 Hb_001863_450 Hb_008253_040--Hb_001863_450 Hb_008253_040--Hb_001345_030 Hb_000230_250 Hb_000230_250 Hb_004007_210--Hb_000230_250 Hb_019026_040 Hb_019026_040 Hb_004007_210--Hb_019026_040 Hb_005054_320 Hb_005054_320 Hb_004007_210--Hb_005054_320 Hb_010175_050 Hb_010175_050 Hb_004007_210--Hb_010175_050 Hb_005772_020 Hb_005772_020 Hb_004007_210--Hb_005772_020 Hb_004880_120 Hb_004880_120 Hb_004007_210--Hb_004880_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166803 2.29641 0.42566 0.0977274 0.0439496 0.0714929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0249484 0 0 0.0625324 0.620526

CAGE analysis