Hb_005833_030

Information

Type -
Description -
Location Contig5833: 68402-72114
Sequence    

Annotation

kegg
ID rcu:RCOM_0902840
description hypothetical protein
nr
ID XP_012091264.1
description PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
swissprot
ID Q9FZ45
description Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1
trembl
ID A0A067JAA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21153 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49883: 69695-69899 , PASA_asmbl_49884: 68582-72049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005833_030 0.0 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
2 Hb_002687_060 0.0772791788 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
3 Hb_000994_020 0.0865608323 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
4 Hb_000297_030 0.0919058498 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
5 Hb_000890_160 0.0944718316 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
6 Hb_000260_770 0.0971314208 - - er lumen protein retaining receptor, putative [Ricinus communis]
7 Hb_152910_010 0.1022704763 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
8 Hb_000784_080 0.1023671577 - - protein disulfide isomerase, putative [Ricinus communis]
9 Hb_006468_010 0.1023839117 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
10 Hb_000046_600 0.1069589347 - - PREDICTED: cullin-1-like [Jatropha curcas]
11 Hb_015026_100 0.1077088476 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
12 Hb_024758_020 0.1082992716 - - acyl-CoA binding protein 3B [Vernicia fordii]
13 Hb_009659_030 0.1106061707 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
14 Hb_156635_020 0.1141129712 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
15 Hb_052135_020 0.1142688838 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
16 Hb_012760_030 0.1148856674 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
17 Hb_164945_010 0.1169001384 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
18 Hb_005322_050 0.1170224605 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
19 Hb_000300_550 0.117690758 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
20 Hb_000890_030 0.1176981021 - - plastid CUL1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005833_030 Hb_005833_030 Hb_002687_060 Hb_002687_060 Hb_005833_030--Hb_002687_060 Hb_000994_020 Hb_000994_020 Hb_005833_030--Hb_000994_020 Hb_000297_030 Hb_000297_030 Hb_005833_030--Hb_000297_030 Hb_000890_160 Hb_000890_160 Hb_005833_030--Hb_000890_160 Hb_000260_770 Hb_000260_770 Hb_005833_030--Hb_000260_770 Hb_152910_010 Hb_152910_010 Hb_005833_030--Hb_152910_010 Hb_002687_060--Hb_000297_030 Hb_024758_020 Hb_024758_020 Hb_002687_060--Hb_024758_020 Hb_006468_010 Hb_006468_010 Hb_002687_060--Hb_006468_010 Hb_158845_060 Hb_158845_060 Hb_002687_060--Hb_158845_060 Hb_000122_080 Hb_000122_080 Hb_002687_060--Hb_000122_080 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000994_020--Hb_000260_770 Hb_006501_010 Hb_006501_010 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_000297_030--Hb_006468_010 Hb_000297_030--Hb_158845_060 Hb_016461_020 Hb_016461_020 Hb_000297_030--Hb_016461_020 Hb_000297_030--Hb_000890_160 Hb_000297_030--Hb_000046_600 Hb_000297_030--Hb_024758_020 Hb_000890_160--Hb_006468_010 Hb_008725_050 Hb_008725_050 Hb_000890_160--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_000890_160--Hb_003428_090 Hb_003687_120 Hb_003687_120 Hb_000890_160--Hb_003687_120 Hb_000866_140 Hb_000866_140 Hb_000890_160--Hb_000866_140 Hb_010068_070 Hb_010068_070 Hb_000890_160--Hb_010068_070 Hb_012940_040 Hb_012940_040 Hb_000260_770--Hb_012940_040 Hb_000139_320 Hb_000139_320 Hb_000260_770--Hb_000139_320 Hb_003470_040 Hb_003470_040 Hb_000260_770--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000260_770--Hb_004319_050 Hb_004724_370 Hb_004724_370 Hb_000260_770--Hb_004724_370 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_152910_010--Hb_004319_050 Hb_152910_010--Hb_000302_170 Hb_152910_010--Hb_000300_550 Hb_000640_190 Hb_000640_190 Hb_152910_010--Hb_000640_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66961 8.54321 12.2972 10.2061 4.0446 4.33979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05509 1.3475 2.38425 8.39251 3.68194

CAGE analysis