Hb_005834_030

Information

Type -
Description -
Location Contig5834: 34384-43596
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005834_030 0.0 - - -
2 Hb_003675_010 0.0317230401 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
3 Hb_000270_820 0.0317554153 - - -
4 Hb_001105_080 0.0482003544 - - -
5 Hb_005396_140 0.053975085 - - -
6 Hb_140618_010 0.0564717866 - - -
7 Hb_001241_090 0.0565040267 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
8 Hb_052600_010 0.0566241264 - - -
9 Hb_000510_380 0.0835401854 - - -
10 Hb_000482_130 0.0835450652 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_012543_020 0.0835494142 - - -
12 Hb_185616_010 0.0835563902 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_061463_010 0.0835935923 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_002130_010 0.0836064452 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_000098_160 0.0836707536 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003052_160 0.0836707536 - - -
17 Hb_000413_310 0.0836834372 - - -
18 Hb_007393_010 0.083781287 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
19 Hb_000914_160 0.0838001889 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
20 Hb_006053_010 0.0838124596 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_005834_030 Hb_005834_030 Hb_003675_010 Hb_003675_010 Hb_005834_030--Hb_003675_010 Hb_000270_820 Hb_000270_820 Hb_005834_030--Hb_000270_820 Hb_001105_080 Hb_001105_080 Hb_005834_030--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_005834_030--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_005834_030--Hb_140618_010 Hb_001241_090 Hb_001241_090 Hb_005834_030--Hb_001241_090 Hb_003675_010--Hb_000270_820 Hb_003675_010--Hb_001105_080 Hb_003675_010--Hb_005396_140 Hb_003675_010--Hb_140618_010 Hb_003675_010--Hb_001241_090 Hb_000510_380 Hb_000510_380 Hb_000270_820--Hb_000510_380 Hb_000482_130 Hb_000482_130 Hb_000270_820--Hb_000482_130 Hb_012543_020 Hb_012543_020 Hb_000270_820--Hb_012543_020 Hb_185616_010 Hb_185616_010 Hb_000270_820--Hb_185616_010 Hb_001105_080--Hb_005396_140 Hb_001105_080--Hb_140618_010 Hb_001105_080--Hb_001241_090 Hb_052600_010 Hb_052600_010 Hb_001105_080--Hb_052600_010 Hb_005396_140--Hb_140618_010 Hb_005396_140--Hb_001241_090 Hb_005396_140--Hb_052600_010 Hb_140618_010--Hb_001241_090 Hb_140618_010--Hb_052600_010 Hb_001241_090--Hb_052600_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152408 0.0799121 0 0 0

CAGE analysis