Hb_005834_050

Information

Type -
Description -
Location Contig5834: 71819-74504
Sequence    

Annotation

kegg
ID rcu:RCOM_1092970
description cationic amino acid transporter, putative
nr
ID XP_012075649.1
description PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
swissprot
ID Q84MA5
description Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1
trembl
ID A0A067KIW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09246 PE=4 SV=1
Gene Ontology
ID GO:0005622
description cationic amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49893: 73230-74464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005834_050 0.0 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
2 Hb_002995_010 0.0712021374 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
3 Hb_012691_010 0.09949141 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
4 Hb_001776_130 0.1096700724 - - metallothionein [Hevea brasiliensis]
5 Hb_000035_150 0.1118420255 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
6 Hb_003759_040 0.1122271795 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
7 Hb_006615_220 0.1189944725 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
8 Hb_007643_060 0.1200951353 - - -
9 Hb_010407_150 0.1205225698 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
10 Hb_006789_030 0.1243045752 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
11 Hb_006294_030 0.1253515759 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_137272_010 0.1254356867 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
13 Hb_001918_030 0.1369003607 - - -
14 Hb_007120_130 0.1374707393 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003992_130 0.1394039805 - - unnamed protein product [Vitis vinifera]
16 Hb_005743_010 0.14019779 - - RING/U-box superfamily protein, putative [Theobroma cacao]
17 Hb_000018_090 0.1404095228 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_007951_020 0.1414567448 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
19 Hb_001001_010 0.1444975918 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
20 Hb_004567_070 0.1452520242 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005834_050 Hb_005834_050 Hb_002995_010 Hb_002995_010 Hb_005834_050--Hb_002995_010 Hb_012691_010 Hb_012691_010 Hb_005834_050--Hb_012691_010 Hb_001776_130 Hb_001776_130 Hb_005834_050--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_005834_050--Hb_000035_150 Hb_003759_040 Hb_003759_040 Hb_005834_050--Hb_003759_040 Hb_006615_220 Hb_006615_220 Hb_005834_050--Hb_006615_220 Hb_002311_500 Hb_002311_500 Hb_002995_010--Hb_002311_500 Hb_002995_010--Hb_001776_130 Hb_002995_010--Hb_000035_150 Hb_002817_030 Hb_002817_030 Hb_002995_010--Hb_002817_030 Hb_004567_070 Hb_004567_070 Hb_002995_010--Hb_004567_070 Hb_006294_030 Hb_006294_030 Hb_012691_010--Hb_006294_030 Hb_000471_030 Hb_000471_030 Hb_012691_010--Hb_000471_030 Hb_007643_060 Hb_007643_060 Hb_012691_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_012691_010--Hb_007951_020 Hb_005743_010 Hb_005743_010 Hb_012691_010--Hb_005743_010 Hb_000018_090 Hb_000018_090 Hb_001776_130--Hb_000018_090 Hb_001776_130--Hb_003759_040 Hb_003688_220 Hb_003688_220 Hb_001776_130--Hb_003688_220 Hb_009907_020 Hb_009907_020 Hb_001776_130--Hb_009907_020 Hb_000035_150--Hb_007643_060 Hb_003992_130 Hb_003992_130 Hb_000035_150--Hb_003992_130 Hb_000035_150--Hb_007951_020 Hb_000035_150--Hb_006615_220 Hb_003626_020 Hb_003626_020 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_007120_130 Hb_007120_130 Hb_003759_040--Hb_007120_130 Hb_028487_040 Hb_028487_040 Hb_003759_040--Hb_028487_040 Hb_003759_040--Hb_002995_010 Hb_000914_140 Hb_000914_140 Hb_003759_040--Hb_000914_140 Hb_006615_220--Hb_007643_060 Hb_006615_220--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_006615_220--Hb_000343_010 Hb_006266_010 Hb_006266_010 Hb_006615_220--Hb_006266_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0113719 0.688533 2.73085 0.636465 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.608063 0.557011

CAGE analysis