Hb_005839_010

Information

Type -
Description -
Location Contig5839: 25914-29681
Sequence    

Annotation

kegg
ID pxb:103930282
description 30S ribosomal protein S13, chloroplastic-like
nr
ID AEC10995.1
description 30S ribosomal protein s13 [Camellia sinensis]
swissprot
ID P82163
description 30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2
trembl
ID F4YFD4
description 30S ribosomal protein s13 OS=Camellia sinensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description 30s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49896: 29189-29475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_010 0.0 - - 30S ribosomal protein s13 [Camellia sinensis]
2 Hb_002204_040 0.1926288361 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
3 Hb_000589_320 0.1944281987 - - unnamed protein product [Vitis vinifera]
4 Hb_001385_080 0.199292393 - - -
5 Hb_000805_300 0.2014564339 - - -
6 Hb_001454_110 0.2027710845 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_122567_020 0.2030171786 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
8 Hb_101151_030 0.2088128474 - - -
9 Hb_000962_010 0.2121156312 - - -
10 Hb_079978_010 0.2125740937 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
11 Hb_003623_020 0.2175290408 - - -
12 Hb_059952_010 0.2244646922 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
13 Hb_001385_090 0.2286121922 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_106873_010 0.2342228297 - - -
15 Hb_000291_130 0.2347680795 - - -
16 Hb_005933_010 0.2362389505 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
17 Hb_007188_050 0.2405810869 - - -
18 Hb_032531_040 0.2416681896 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
19 Hb_007447_020 0.2429897445 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
20 Hb_005318_020 0.250411953 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005839_010 Hb_005839_010 Hb_002204_040 Hb_002204_040 Hb_005839_010--Hb_002204_040 Hb_000589_320 Hb_000589_320 Hb_005839_010--Hb_000589_320 Hb_001385_080 Hb_001385_080 Hb_005839_010--Hb_001385_080 Hb_000805_300 Hb_000805_300 Hb_005839_010--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_005839_010--Hb_001454_110 Hb_122567_020 Hb_122567_020 Hb_005839_010--Hb_122567_020 Hb_000291_130 Hb_000291_130 Hb_002204_040--Hb_000291_130 Hb_079978_010 Hb_079978_010 Hb_002204_040--Hb_079978_010 Hb_106873_010 Hb_106873_010 Hb_002204_040--Hb_106873_010 Hb_002204_040--Hb_001385_080 Hb_002204_040--Hb_122567_020 Hb_000589_320--Hb_106873_010 Hb_000589_320--Hb_001454_110 Hb_032531_040 Hb_032531_040 Hb_000589_320--Hb_032531_040 Hb_042026_010 Hb_042026_010 Hb_000589_320--Hb_042026_010 Hb_000962_010 Hb_000962_010 Hb_000589_320--Hb_000962_010 Hb_001385_080--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_001385_080--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_001385_080--Hb_059952_010 Hb_001385_080--Hb_000805_300 Hb_001385_080--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_001385_080--Hb_101151_030 Hb_000805_300--Hb_001454_110 Hb_000805_300--Hb_122567_020 Hb_000805_300--Hb_101151_030 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_001454_110--Hb_032531_040 Hb_032531_050 Hb_032531_050 Hb_001454_110--Hb_032531_050 Hb_001454_110--Hb_059952_010 Hb_001579_040 Hb_001579_040 Hb_001454_110--Hb_001579_040 Hb_001454_110--Hb_101151_030 Hb_122567_020--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.412769 0.135962 0.12639 2.10192 0.7611 15.9134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.234475 0.0615318 0.25777

CAGE analysis