Hb_005839_040

Information

Type -
Description -
Location Contig5839: 41433-42363
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08420g
description POPTRDRAFT_836087; hypothetical protein
nr
ID XP_002325917.1
description hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IQ43
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08420g PE=4 SV=1
Gene Ontology
ID GO:0005634
description hypothetical protein POPTR_0019s08420g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49899: 41388-42518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_040 0.0 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
2 Hb_154038_010 0.0499803329 - - cytochrome P450, putative [Ricinus communis]
3 Hb_006483_040 0.0508872423 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
4 Hb_008453_050 0.0518737214 - - PREDICTED: peroxidase 64 [Jatropha curcas]
5 Hb_072771_010 0.0551687017 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
6 Hb_001345_050 0.0553305522 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
7 Hb_001472_150 0.0573141511 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
8 Hb_004807_010 0.0584015631 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
9 Hb_000329_120 0.0584782761 - - 21 kDa protein precursor, putative [Ricinus communis]
10 Hb_001232_070 0.0640122508 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012098_120 0.0644187956 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
12 Hb_064445_020 0.0664966767 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
13 Hb_002326_010 0.0689682822 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
14 Hb_002391_340 0.0722371711 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
15 Hb_001863_470 0.0757274334 - - PREDICTED: uncharacterized protein LOC105630613 [Jatropha curcas]
16 Hb_000224_190 0.0765704157 - - zinc finger protein, putative [Ricinus communis]
17 Hb_001593_040 0.0772871632 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_003151_020 0.0786063148 - - Ankyrin repeat family protein, putative [Theobroma cacao]
19 Hb_185811_010 0.0798725451 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
20 Hb_000803_080 0.0808737148 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005839_040 Hb_005839_040 Hb_154038_010 Hb_154038_010 Hb_005839_040--Hb_154038_010 Hb_006483_040 Hb_006483_040 Hb_005839_040--Hb_006483_040 Hb_008453_050 Hb_008453_050 Hb_005839_040--Hb_008453_050 Hb_072771_010 Hb_072771_010 Hb_005839_040--Hb_072771_010 Hb_001345_050 Hb_001345_050 Hb_005839_040--Hb_001345_050 Hb_001472_150 Hb_001472_150 Hb_005839_040--Hb_001472_150 Hb_154038_010--Hb_006483_040 Hb_154038_010--Hb_008453_050 Hb_064445_020 Hb_064445_020 Hb_154038_010--Hb_064445_020 Hb_154038_010--Hb_072771_010 Hb_154038_010--Hb_001345_050 Hb_002326_010 Hb_002326_010 Hb_154038_010--Hb_002326_010 Hb_006483_040--Hb_064445_020 Hb_006483_040--Hb_008453_050 Hb_001232_070 Hb_001232_070 Hb_006483_040--Hb_001232_070 Hb_006483_040--Hb_001472_150 Hb_002391_340 Hb_002391_340 Hb_006483_040--Hb_002391_340 Hb_008453_050--Hb_002326_010 Hb_008453_050--Hb_064445_020 Hb_008453_050--Hb_072771_010 Hb_008453_050--Hb_001345_050 Hb_072771_010--Hb_001345_050 Hb_000224_190 Hb_000224_190 Hb_072771_010--Hb_000224_190 Hb_072771_010--Hb_002326_010 Hb_001926_080 Hb_001926_080 Hb_072771_010--Hb_001926_080 Hb_001345_050--Hb_000224_190 Hb_001345_050--Hb_002326_010 Hb_001345_050--Hb_001926_080 Hb_001472_150--Hb_001232_070 Hb_001472_150--Hb_002391_340 Hb_001472_150--Hb_154038_010 Hb_001472_150--Hb_064445_020 Hb_001472_150--Hb_008453_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.486148 103.956 162.653 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.962899 0.567428 0 0.0390881 260.376

CAGE analysis